View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16020_high_4 (Length: 680)
Name: NF16020_high_4
Description: NF16020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16020_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 515; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 19 - 591
Target Start/End: Original strand, 34879101 - 34879681
Alignment:
| Q |
19 |
ccaccaactttattccaaccgtttt-ttgttaccatttcatatctaggcccacattcacattcgtgctactgttctctaatctttaattgctctattcca |
117 |
Q |
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| T |
34879101 |
ccaccaactttattccaaccgtttttttgttaccatttcatatctaggcccacattcacattcgtgctactgttctctaatctttaattgctctattcca |
34879200 |
T |
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| Q |
118 |
tacaatattgcattaccaagggatataggaagcaaaaactgtcctctaaatttgacatgtctgctgctgtaggagctgtgtctacaaccaaagatgtttc |
217 |
Q |
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| T |
34879201 |
tacaatattgcattaccaagggatataggaagcaaaaactgtcctctaaatttgacatgtctgctgctgtaggagctgtgtctacaaccaaagatgtttc |
34879300 |
T |
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| Q |
218 |
cttcaatgctcatttggaggaagagcacaaaaacaaaggaaccaacaaggttggtgtcaactatgatgaagctgaggaaattgtgccagatgaagatgaa |
317 |
Q |
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| T |
34879301 |
cttcaatgctcatttggaggaagagcacaaaaacaaaggaaccaacaaggttggtgtcaactatgatgaagctgaggaaattgtgccagatgaagatgaa |
34879400 |
T |
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| Q |
318 |
gaggaagaacccaagttggaattggatcttggccctcagttttctcttaaggaacaacttgagaaagataaagtaaggttttcttttgaaatggtttctg |
417 |
Q |
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| T |
34879401 |
gaggaagaacccaagttggaattggatcttggccctcagttttctcttaaggaacaacttgagaaagataaagtaaggttttcttttgaaatggtttctg |
34879500 |
T |
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| Q |
418 |
aatttattttatttgtctctagtag-------tgnnnnnnnngatgcattggaaattttgttttgtattttaaaggatgatgaaagcttgaggaaatgga |
510 |
Q |
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| T |
34879501 |
aatttattttatttgtctctagtagttttttttttttttttttatgcattggaaattttgttttgtattttaaaggatgatgaaagcttgaggaaatgga |
34879600 |
T |
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| Q |
511 |
aagaacagcttctaggaaatgttgatgtgtctgctgttggaggtacttagcttcccctcaattttgtttttcttgtggaac |
591 |
Q |
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| T |
34879601 |
aagaacagcttctaggaaatgttgatgtgtctgctgttggaggtacttagcttcccctcaattttgtttttcttgtggaac |
34879681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 482 - 558
Target Start/End: Complemental strand, 38371681 - 38371605
Alignment:
| Q |
482 |
aaaggatgatgaaagcttgaggaaatggaaagaacagcttctaggaaatgttgatgtgtctgctgttggaggtactt |
558 |
Q |
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| T |
38371681 |
aaaggatgatgaaagtttgagaaaatggaaagagcaacttctgggtagtgttgatatatctgctgttggaggtactt |
38371605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 336 - 391
Target Start/End: Complemental strand, 38371827 - 38371772
Alignment:
| Q |
336 |
gaattggatcttggccctcagttttctcttaaggaacaacttgagaaagataaagt |
391 |
Q |
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| T |
38371827 |
gaattggatcttggtcctcaatttaccctcaaggaacagcttgagaaagataaagt |
38371772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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