View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16020_high_41 (Length: 391)
Name: NF16020_high_41
Description: NF16020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16020_high_41 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 16 - 229
Target Start/End: Complemental strand, 7644034 - 7643821
Alignment:
| Q |
16 |
caacatcatactataagacttgagacagagcaaattcatgatcttcaagaaaactccaacatatatggagcttaataaagggtcagtcaatgcacggtca |
115 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7644034 |
caacatcatactataagacttgagacacagaaaattcatgatcttcaagaaaactccaacatatatggagcttaataaagggtcagtcaatgcacggtca |
7643935 |
T |
|
| Q |
116 |
taagaaaactcaaaagatacacattgtaatccattgtgttgtgtgaactgtttggaaaagtgagtatttgtgtgattttctttagctttacaactaattt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7643934 |
taagaaaactcaaaagatacacattgtaatccattgtgttgtgtgaactgtttgcaaaagtgagtatttgtgtgattttctttagctttacaactaattt |
7643835 |
T |
|
| Q |
216 |
gttggttcctcaaa |
229 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
7643834 |
gttggtccctcaaa |
7643821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 341
Target Start/End: Complemental strand, 7643745 - 7643709
Alignment:
| Q |
305 |
gagataacgcttattgagccatactaaatatgtcatg |
341 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
7643745 |
gagataacacttattaagccatactaaatatgtcatg |
7643709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University