View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16020_high_42 (Length: 390)
Name: NF16020_high_42
Description: NF16020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16020_high_42 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 6 - 390
Target Start/End: Complemental strand, 24358142 - 24357746
Alignment:
| Q |
6 |
ataatcatgacagcaaaagtttctatttggaaaaagtgtttgggagtgtaaatattattaatggtgtagaaggtgatgagatggaaatttacaatgttcc |
105 |
Q |
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| T |
24358142 |
ataatcatgacagcaaaagtttctatttggaaaaggtgtttgggagtgtaaatattattaatggtgtagaaggtgatgagatggaaatttacaatgttcc |
24358043 |
T |
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| Q |
106 |
tcctctagagagtgttaatagtactattacttctgaacatagtgtaaaaatggagaatgcatgcaatggagaagatggt---------------tataac |
190 |
Q |
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| T |
24358042 |
tcctctagagagtgttaatagtactattacttctgaacatagtgtaaaaatggagaatgcatgcaatggagaagatggtaattacaatagtagttataac |
24357943 |
T |
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| Q |
191 |
tttgatgacataaacaacattgttattaacaactgcaatgttgttagtaagagaagtgaaaatattagagctgatgatgaggtggagaatttgtttcatg |
290 |
Q |
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| T |
24357942 |
tttgatgacataaacaacattgttattaacaactgcaatgttgttagtaagagaagtgaaaata---gagttgatgatgaggtggagaatttgtttcatg |
24357846 |
T |
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| Q |
291 |
gagatttatctgttggagattggaatttggaagacttgatgaaagatgtttcatcatttccatttcttgatttttcaaactgatgatgcaagcagattca |
390 |
Q |
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| T |
24357845 |
gagatttatctgttggagattggaatttggaagacttgatgaaagatgtttcatcatttccatttcttgatttttcaaactgatgatgcaagcagattca |
24357746 |
T |
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