View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16020_high_47 (Length: 375)
Name: NF16020_high_47
Description: NF16020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16020_high_47 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 352; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 39954610 - 39954965
Alignment:
| Q |
1 |
taaaattcaaacagattatattctcacaaaattaaaagtaaaagcaaatgtgctaggttcaaagtaatttcagcaaagacaaaattcattcattcatcgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39954610 |
taaaattcaaacagattatattctcacaaaattaaaagtaaaagcaaatgtgctaggttcaaagtaatttcagcaaagacaaaattcattcattcatcgt |
39954709 |
T |
|
| Q |
101 |
taagaattaagatacaagtccaaatactagaaccacagaactaagcattcaaccagatctaagactactaaatttatattaaccagatttagaactaaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39954710 |
taagaattaagatacaagtccaaatactagaaccacaggactaagcattcaaccagatctaagactactaaatttatattaaccagatttagaactaaat |
39954809 |
T |
|
| Q |
201 |
cgaccagaacaaactaaaccctaaatttaaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39954810 |
cgaccagaacaaactaaaccctaaatttaaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttt |
39954909 |
T |
|
| Q |
301 |
tcctcctagcatgctcagtgtaagtaacagcatcacgaatcacattctcaagaaag |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39954910 |
tcctcctagcatgctcagtgtaagtaacagcatcacgaatcacattctcaagaaag |
39954965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 229 - 334
Target Start/End: Complemental strand, 10575576 - 10575471
Alignment:
| Q |
229 |
aaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaac |
328 |
Q |
| |
|
||||||||||||| ||||| || ||||| || ||||| || || || ||||||||||| || || |||||||||||||| |||||||||||||||||||| |
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|
| T |
10575576 |
aaccaccgaaaccatagagggttcttccttgtctcttaagcgcgtaaacaacatccatagcagtcacagttttcctcctcgcatgctcagtgtaagtaac |
10575477 |
T |
|
| Q |
329 |
agcatc |
334 |
Q |
| |
|
|||||| |
|
|
| T |
10575476 |
agcatc |
10575471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 276 - 348
Target Start/End: Complemental strand, 354547 - 354475
Alignment:
| Q |
276 |
acaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaacagcatcacgaatcacattct |
348 |
Q |
| |
|
||||||||||| || || | ||| |||||||| |||||||||||||||||||||||||||| |||| |||||| |
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|
| T |
354547 |
acaacatccatagcagtcagagtcttcctccttgcatgctcagtgtaagtaacagcatcacaaatctcattct |
354475 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 228 - 356
Target Start/End: Complemental strand, 53328904 - 53328776
Alignment:
| Q |
228 |
taaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaa |
327 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||||||||| || ||||||||||| || |||||||| || | | ||||||||| ||||| || | |
|
|
| T |
53328904 |
taacccccgaaaccgtaaagagtccttccctgcctcttgagagcgtaaacaacatccattgcagtaacagtcttacggcgagcatgctctgtgtatgtga |
53328805 |
T |
|
| Q |
328 |
cagcatcacgaatcacattctcaagaaag |
356 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
53328804 |
cagcatcacgaatcacattctcaagaaag |
53328776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 252 - 349
Target Start/End: Complemental strand, 22898719 - 22898622
Alignment:
| Q |
252 |
cttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaacagcatcacgaatcacattctc |
349 |
Q |
| |
|
|||||||| |||||||| ||||| || |||||||| || ||||| || ||||| ||||| |||||||||||||| |||||||| | |||||||||||| |
|
|
| T |
22898719 |
cttccctgtctcttgagggcataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgtaagtcacagcatctctaatcacattctc |
22898622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 252 - 349
Target Start/End: Complemental strand, 22950387 - 22950290
Alignment:
| Q |
252 |
cttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaacagcatcacgaatcacattctc |
349 |
Q |
| |
|
|||||||| |||||||| ||||| || |||||||| || ||||| || ||||| ||||| |||||||||||||| |||||||| | |||||||||||| |
|
|
| T |
22950387 |
cttccctgtctcttgagggcataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgtaagtcacagcatctctaatcacattctc |
22950290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 229 - 349
Target Start/End: Complemental strand, 24982235 - 24982115
Alignment:
| Q |
229 |
aaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaac |
328 |
Q |
| |
|
||||||||||||| ||||| || ||||| || ||||| | |||||| ||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| |
|
|
| T |
24982235 |
aaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaac |
24982136 |
T |
|
| Q |
329 |
agcatcacgaatcacattctc |
349 |
Q |
| |
|
|||||||| || |||||||| |
|
|
| T |
24982135 |
tgcatcacggatgacattctc |
24982115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 252 - 349
Target Start/End: Original strand, 21584613 - 21584710
Alignment:
| Q |
252 |
cttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaacagcatcacgaatcacattctc |
349 |
Q |
| |
|
||||| |||||||| | |||||| ||||||||||| || || ||||| |||||||| |||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
21584613 |
cttccttgcctcttcaaagcataaacaacatccatagcagtcacagtcttcctccttgcatgctcagtgtacgtaaccgcatcacgaatcacattctc |
21584710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 229 - 349
Target Start/End: Original strand, 24919879 - 24919999
Alignment:
| Q |
229 |
aaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaac |
328 |
Q |
| |
|
|||| ||||| || ||||| || |||||||||||||| | |||||| || ||||||||||| || || || ||||||||||| ||||||||||| || || |
|
|
| T |
24919879 |
aacctccgaatccatagagggttcttccctgcctcttcaaagcatagacgacatccatggctgtcactgtcttcctcctagcgtgctcagtgtatgtcac |
24919978 |
T |
|
| Q |
329 |
agcatcacgaatcacattctc |
349 |
Q |
| |
|
|||||||||||| |||||||| |
|
|
| T |
24919979 |
agcatcacgaatgacattctc |
24919999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 237 - 349
Target Start/End: Complemental strand, 25085219 - 25085107
Alignment:
| Q |
237 |
aaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaacagcatcac |
336 |
Q |
| |
|
||||| ||||| || |||||||| ||||| | |||||| |||||||||||||| || ||||| |||||||| || ||||||||||| ||||| ||||||| |
|
|
| T |
25085219 |
aaaccatagagggttcttccctgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctccttgcgtgctcagtgtatgtaactgcatcac |
25085120 |
T |
|
| Q |
337 |
gaatcacattctc |
349 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
25085119 |
ggatcacattctc |
25085107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 229 - 349
Target Start/End: Original strand, 31825550 - 31825670
Alignment:
| Q |
229 |
aaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaac |
328 |
Q |
| |
|
|||| ||||| || ||||| || |||||||||||||| | |||||| ||||||||||| |||||||| || ||||||||||| ||||||||||| || || |
|
|
| T |
31825550 |
aacctccgaatccatagagggttcttccctgcctcttcaaagcatagacaacatccatcgcggtaactgtcttcctcctagcgtgctcagtgtatgtgac |
31825649 |
T |
|
| Q |
329 |
agcatcacgaatcacattctc |
349 |
Q |
| |
|
|||||||| || |||||||| |
|
|
| T |
31825650 |
cgcatcacggatgacattctc |
31825670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 243 - 349
Target Start/End: Original strand, 24923467 - 24923573
Alignment:
| Q |
243 |
tagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaacagcatcacgaatca |
342 |
Q |
| |
|
||||| || |||||||| ||||| | |||||| |||||||||||||| || || || |||||||| || ||||||||||| || |||||||||||||| | |
|
|
| T |
24923467 |
tagagggttcttccctgtctcttcaaagcatagacaacatccatggctgtcactgtcttcctccttgcgtgctcagtgtatgtcacagcatcacgaatga |
24923566 |
T |
|
| Q |
343 |
cattctc |
349 |
Q |
| |
|
||||||| |
|
|
| T |
24923567 |
cattctc |
24923573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 237 - 346
Target Start/End: Original strand, 24497260 - 24497369
Alignment:
| Q |
237 |
aaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaacagcatcac |
336 |
Q |
| |
|
||||| ||||| || ||||| || ||||| | |||||| |||||||||||||| || ||||| |||||||| || ||||||||||| ||||| ||||||| |
|
|
| T |
24497260 |
aaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctccttgcgtgctcagtgtatgtaactgcatcac |
24497359 |
T |
|
| Q |
337 |
gaatcacatt |
346 |
Q |
| |
|
| |||||||| |
|
|
| T |
24497360 |
ggatcacatt |
24497369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 228 - 355
Target Start/End: Original strand, 26358540 - 26358667
Alignment:
| Q |
228 |
taaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaa |
327 |
Q |
| |
|
||||| || ||||| || || |||||||| ||||||||||| ||||| ||||||||||| || ||||| ||||| | | |||||| ||||||||||| | |
|
|
| T |
26358540 |
taacccccaaaaccataaagggtccttccttgcctcttgagcgcataaacaacatccatagcagtaactgttttgcgacgagcatgttcagtgtaagtga |
26358639 |
T |
|
| Q |
328 |
cagcatcacgaatcacattctcaagaaa |
355 |
Q |
| |
|
||||||||||||| |||||||||||||| |
|
|
| T |
26358640 |
cagcatcacgaataacattctcaagaaa |
26358667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 246 - 349
Target Start/End: Complemental strand, 41027744 - 41027641
Alignment:
| Q |
246 |
agagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaacagcatcacgaatcacat |
345 |
Q |
| |
|
||||||||||| || ||||| | ||||| ||||||||||| || |||||||| || |||||||| ||||| ||||||||||||||||||||||| |||| |
|
|
| T |
41027744 |
agagtccttccttgtctcttcaatgcataaacaacatccatagcagtaacagtctttctcctagcgtgctctgtgtaagtaacagcatcacgaataacat |
41027645 |
T |
|
| Q |
346 |
tctc |
349 |
Q |
| |
|
|||| |
|
|
| T |
41027644 |
tctc |
41027641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 229 - 349
Target Start/End: Original strand, 14261025 - 14261145
Alignment:
| Q |
229 |
aaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaac |
328 |
Q |
| |
|
|||| |||||||| || | ||||||||| || ||||| | ||||| ||||||||||| || ||||| || |||||||| ||||| ||||| || ||||| |
|
|
| T |
14261025 |
aacctccgaaaccatacaaagtccttccttgtctcttcaacgcataaacaacatccatagcagtaaccgtcttcctcctcgcatgttcagtatacgtaac |
14261124 |
T |
|
| Q |
329 |
agcatcacgaatcacattctc |
349 |
Q |
| |
|
|||||| | ||||||||||| |
|
|
| T |
14261125 |
agcatctcttatcacattctc |
14261145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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