View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16020_high_5 (Length: 668)

Name: NF16020_high_5
Description: NF16020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16020_high_5
NF16020_high_5
[»] chr2 (10 HSPs)
chr2 (21-654)||(1443992-1444629)
chr2 (401-544)||(1450508-1450652)
chr2 (253-356)||(1437232-1437337)
chr2 (356-493)||(1437369-1437509)
chr2 (592-654)||(1437582-1437644)
chr2 (555-656)||(1431836-1431937)
chr2 (592-651)||(1424816-1424875)
chr2 (295-337)||(1450406-1450448)
chr2 (107-143)||(1437129-1437165)
chr2 (609-654)||(1450736-1450781)


Alignment Details
Target: chr2 (Bit Score: 589; Significance: 0; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 21 - 654
Target Start/End: Original strand, 1443992 - 1444629
Alignment:
Q  21 ggtacattttgatgtatgtggaccatttaatttcctattatcactactttataataaagtattgctttatctttcctnnnnnnnn----taaagtattgc 116  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||    
T  1443992 ggtacattttgatggatgtggaccatttaatttcctattatcactactttataataaagtattgctttatctttcctaaaaaaaaaaaataaagtattgc 1444091  T
Q  117 tttatctatcttttttaacgtgtgaacgttttttaaagttgcaagccagaccgttggattaagtgaagtcataggatcttctggtgaggttgtcacattg 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1444092 tttatctatcttttttaacgtgtgaacgttttttaaagttgcaagccagaccgttggattaagtgaagtcataggatcttctggtgaggttgtcacattg 1444191  T
Q  217 gaagaggaaagtttgagaaagaaaaagttgacttgcgtagtacatctttgactctcaatttcatttcacattatttctaactaaccacacttcattatca 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1444192 gaagaggaaagtttgagaaagaaaaagttgacttgcgtagtacatctttgactctcaatttcatttcacattatttctaactaaccacacttcattatca 1444291  T
Q  317 atattatattactatcttgttaacatgtcctacatgttcaacaatgatttaatatttcttaataaacatgtgtcctaaattaaatattattcatgcaaag 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1444292 atattatattactatcttgttaacatgtcctacatgttcaacaatgatttaatatttcttaattaacatgtgtcctaaattaaatattattcatgcaaag 1444391  T
Q  417 aaaacaaacaaaagccatacatacttaaataatgaactttaccaacctattttttgtttggtcaaaatgttgtggagtttgatgatgggtttcttgtaga 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1444392 aaaacaaacaaaagccatacatacttaaataatgaactttaccaacctattttttgtttggtcaaaatgttgtggagtttgatgatgggtttcttgtaga 1444491  T
Q  517 tcaagagagagagggtttgtgttttgttttatgaatataaacatggagcaagtagcttcatcttctacagtttcctttcttttttgggctattttggtgc 616  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1444492 tcaagagagagagggtttgtgttttgttttatgaatataaacatggagcaagtagcttcatcttctacagtttcctttcttttttgggctattttggtgc 1444591  T
Q  617 ttcatttgttgcttaaagcttcttccaatgatgaaagt 654  Q
    ||||||||||||||||||||||||||||||||||||||    
T  1444592 ttcatttgttgcttaaagcttcttccaatgatgaaagt 1444629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 401 - 544
Target Start/End: Original strand, 1450508 - 1450652
Alignment:
Q  401 tattattcatgcaaagaaaacaaacaaaagccatacatacttaaataatgaactttaccaacctattttttgtttggtcaaaatgttgtggagtttgatg 500  Q
    |||||||||||||||||||| ||||||||| ||||| ||  ||||| || ||||| || |||| ||||||||||||||| |||||||||||||||||||     
T  1450508 tattattcatgcaaagaaaataaacaaaagtcatac-tatataaattatcaacttcactaacccattttttgtttggtctaaatgttgtggagtttgata 1450606  T
Q  501 atgggtttcttgtagatcaagag--agagagggtttgtgttttgtt 544  Q
    |||||||||||||||||||||||  | ||||||||| |||||||||    
T  1450607 atgggtttcttgtagatcaagagacatagagggtttttgttttgtt 1450652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 253 - 356
Target Start/End: Original strand, 1437232 - 1437337
Alignment:
Q  253 gtagtacatctttgactctcaatttcatttcacatt--atttctaactaaccacacttcattatcaatattatattactatcttgttaacatgtcctaca 350  Q
    ||||||||||||||||||| ||||||||||||| ||  |||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||| |||    
T  1437232 gtagtacatctttgactcttaatttcatttcactttctatttctaactaatcacacttcagtatcaatattatattactatcttgttaacctgtcccaca 1437331  T
Q  351 tgttca 356  Q
    ||||||    
T  1437332 tgttca 1437337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 356 - 493
Target Start/End: Original strand, 1437369 - 1437509
Alignment:
Q  356 aacaatgatttaatatttcttaataaacatgtgtcctaaattaaatattattcatgcaaagaaaacaaacaaaagccatacatacttaa---ataatgaa 452  Q
    |||||| |||| |||| ||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||   || || ||    
T  1437369 aacaatcattttatatctcttaattaacatgtgcccttaattaaatattattcatgcaaagaaaacaaacaaaagccatacatacttaaattattatcaa 1437468  T
Q  453 ctttaccaacctattttttgtttggtcaaaatgttgtggag 493  Q
     || || |||| ||||||| ||| |||||||||||||||||    
T  1437469 tttcacaaacccattttttatttcgtcaaaatgttgtggag 1437509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 592 - 654
Target Start/End: Original strand, 1437582 - 1437644
Alignment:
Q  592 tttcttttttgggctattttggtgcttcatttgttgcttaaagcttcttccaatgatgaaagt 654  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  1437582 tttcttttttgggctattttggtgcttcatttgctgcttaaagcttcttccaatgaagaaagt 1437644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 555 - 656
Target Start/End: Original strand, 1431836 - 1431937
Alignment:
Q  555 aaacatggagcaagtagcttcatcttctacagtttcctttcttttttgggctattttggtgcttcatttgttgcttaaagcttcttccaatgatgaaagt 654  Q
    ||||||||||  ||||  |||| |||||| ||| |||||||||||||||||||||||||||||||||||| | ||||| |||||||| ||||  ||||||    
T  1431836 aaacatggagagagtaagttcagcttctaaagtctcctttcttttttgggctattttggtgcttcatttgctccttaatgcttcttcaaatgtggaaagt 1431935  T
Q  655 ga 656  Q
    ||    
T  1431936 ga 1431937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 592 - 651
Target Start/End: Original strand, 1424816 - 1424875
Alignment:
Q  592 tttcttttttgggctattttggtgcttcatttgttgcttaaagcttcttccaatgatgaa 651  Q
    |||||||||||||||||||||||| || ||||| |||||||||||||||| |||| ||||    
T  1424816 tttcttttttgggctattttggtgtttgatttggtgcttaaagcttcttctaatgttgaa 1424875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 295 - 337
Target Start/End: Original strand, 1450406 - 1450448
Alignment:
Q  295 aactaaccacacttcattatcaatattatattactatcttgtt 337  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  1450406 aactaatcacacttcattatcaatattatattactatcttgtt 1450448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 107 - 143
Target Start/End: Original strand, 1437129 - 1437165
Alignment:
Q  107 aaagtattgctttatctatcttttttaacgtgtgaac 143  Q
    |||||||||||||||||||| ||||||||||||||||    
T  1437129 aaagtattgctttatctatcatttttaacgtgtgaac 1437165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 609 - 654
Target Start/End: Original strand, 1450736 - 1450781
Alignment:
Q  609 tttggtgcttcatttgttgcttaaagcttcttccaatgatgaaagt 654  Q
    |||||| ||||||||| ||||| |||||||||||||||| ||||||    
T  1450736 tttggttcttcatttgctgcttcaagcttcttccaatgaagaaagt 1450781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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