View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16020_high_51 (Length: 368)
Name: NF16020_high_51
Description: NF16020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16020_high_51 |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 134 - 358
Target Start/End: Original strand, 35378851 - 35379075
Alignment:
| Q |
134 |
gtgcatataattttaatcattgatatatttatcaaaggtatatattactcactaaagtgggttgttcactttaaacgaggttatccaattatttgataat |
233 |
Q |
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| T |
35378851 |
gtgcatataattttaatcattgatatatttatcaaaggtatatattactcagtaaagtgggttgttcactttaaacgaggttatccaattatttgataat |
35378950 |
T |
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| Q |
234 |
ctaatnnnnnnnttatctattttaaatatttgaccaaattattgatattttgtaatatttgcagggatgatcaaatgttgttcactgcactcgtatattg |
333 |
Q |
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| T |
35378951 |
ctaataaaaaaattatctattttaaatatttgaccaaattattgatattttgtaatatttgcagggatgatcaaatgttgttcactgtactcgtatattg |
35379050 |
T |
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| Q |
334 |
tatagcatactttatatttcctatg |
358 |
Q |
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| T |
35379051 |
tatagcatactttatatttcctatg |
35379075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 290 - 358
Target Start/End: Original strand, 35354503 - 35354571
Alignment:
| Q |
290 |
atttgcagggatgatcaaatgttgttcactgcactcgtatattgtatagcatactttatatttcctatg |
358 |
Q |
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| T |
35354503 |
atttgcagggatgatcaaatattgttcactgcactagtatattatataggatacatgatatttcctatg |
35354571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 358
Target Start/End: Original strand, 35369648 - 35369716
Alignment:
| Q |
290 |
atttgcagggatgatcaaatgttgttcactgcactcgtatattgtatagcatactttatatttcctatg |
358 |
Q |
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| T |
35369648 |
atttgcagggatgaccaaattttgttcactgcactgttatactacataggatacatgatatttcctatg |
35369716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 322
Target Start/End: Original strand, 19684069 - 19684101
Alignment:
| Q |
290 |
atttgcagggatgatcaaatgttgttcactgca |
322 |
Q |
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| T |
19684069 |
atttgcagggatgatcaaatattgttcactgca |
19684101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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