View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16020_high_58 (Length: 361)
Name: NF16020_high_58
Description: NF16020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16020_high_58 |
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| [»] scaffold0082 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 4194507 - 4194787
Alignment:
| Q |
1 |
aatagatggaaattataggcgacttatcacagcttccagctcagaaggggtgtaaa--tgatacgctggagcaaccttcgcaatgccaacgttgttggga |
98 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| ||| |||||||||||||| |
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| T |
4194507 |
aatagatggaaattataggcgacttatcacagcttccagctcagaaaaggtgtaaagatgatatgctggagcaaccttcgctatgtcaacgttgttggga |
4194606 |
T |
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| Q |
99 |
gtgacctaatgtgaaagtacggaggaaacaagttagaatttattctcagcaagggggcaaacaacttgaagtccatgcatatgaatttaacttttacctt |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4194607 |
gtgacctaatgtgaaagtacggaggaaacaagttagaatttattctcagcaagggggcaaacaacttgaagtccatgcatatgaatttaacttttacctt |
4194706 |
T |
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| Q |
199 |
ctctcccataacttgcttcagaattgataaagcaatagtctcagctttttcaagagttaagtcctgcacaacataataaat |
279 |
Q |
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| T |
4194707 |
ctctcccattacttgcttcagaattgataaagcaatagtctcagctttttcaagagttaagtcctgcacaacataataaat |
4194787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 279 - 346
Target Start/End: Original strand, 4196457 - 4196524
Alignment:
| Q |
279 |
ttggtgcctctctataccctttatggtcttgatcttttcctccaagctctctaaattgtctaccacct |
346 |
Q |
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| T |
4196457 |
ttggtgcctctctataccctttatggtcttgatcttttcctccaagctctctaaattgtctaccacct |
4196524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 153; Significance: 5e-81; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 50772724 - 50772454
Alignment:
| Q |
1 |
aatagatggaaattataggcgacttatcacagcttccagctcagaaggggtgtaaa--tgatacgctggagcaaccttcgcaatgccaacgttgttggga |
98 |
Q |
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||||||||||||| |||||||||||||||||||||||| |||||| ||||| |||| |||||||||||||||||| | |||||| |||||||||||||| |
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| T |
50772724 |
aatagatggaaatcataggcgacttatcacagcttccacctcagacggggtataaagatgatacgctggagcaaccctggcaatgtcaacgttgttggga |
50772625 |
T |
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| Q |
99 |
gtgacctaatgtgaaagtacggaggaaacaagttagaatttattctcagca-agggggcaaacaacttgaagt-ccatgcatatgaatttaacttttacc |
196 |
Q |
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| T |
50772624 |
gtgacctaatgtgaaagtacagaagaaacaagttagaatttattctcagtagggggggcaaacaactggaagtaagatgcatttggttttaac-tttacc |
50772526 |
T |
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| Q |
197 |
ttctctcccataacttgcttcagaattgataaagcaatagtctcagctttttcaagagttaagtcctgcaca |
268 |
Q |
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| T |
50772525 |
ttctcttccataacttgcttcaggattgataaagcaatagtctcagcttcttgaagagttaagtcctgcaca |
50772454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0082 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0082
Description:
Target: scaffold0082; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 279 - 346
Target Start/End: Complemental strand, 3877 - 3810
Alignment:
| Q |
279 |
ttggtgcctctctataccctttatggtcttgatcttttcctccaagctctctaaattgtctaccacct |
346 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3877 |
ttggtgcctctctataccctttatggtcttgatcttttcctccaagctctctaaattgtctaccacct |
3810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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