View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16020_high_63 (Length: 337)
Name: NF16020_high_63
Description: NF16020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16020_high_63 |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 47628195 - 47627864
Alignment:
| Q |
1 |
ccagctgaatggcctgaatttcttctcgtcctgccgtgcatgaaaaatgctggttccatgggaaatggcatttcaattgagacattattaagatatgaaa |
100 |
Q |
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| T |
47628195 |
ccagctgaatggcctgaatttcttctcgtcctgccgtgcatgaaaaatgctggttccatgggaaatggcatttcaattgagacattattaagatatgaaa |
47628096 |
T |
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| Q |
101 |
caacagttcccattgtaggcctatcatctggattatcttggacacaaagtaaaccaatttgcacacacttttctacttcatttggtgaataagattctcg |
200 |
Q |
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| T |
47628095 |
caacagttcccattgtaggcctatcatctggattttcttggacacaaagtaaaccaatttgcacacacttttctacttcatttggtgaataagattcttg |
47627996 |
T |
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| Q |
201 |
caaaattggatccagcatctgaaatggtgattcatctttccattgattccaagcctgaaaccataaatataatacatttcatttcctgattattttcctt |
300 |
Q |
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| T |
47627995 |
cataattggatccagcatctgaaatggtgattcatctttccattgattccaagcctgaagccataaatataatacatttcatttcctgattattttcctt |
47627896 |
T |
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| Q |
301 |
attaatttgcat-ttttgggatctatataagg |
331 |
Q |
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| T |
47627895 |
attaatttgcattttttgggatctatataagg |
47627864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 61 - 161
Target Start/End: Complemental strand, 47619958 - 47619858
Alignment:
| Q |
61 |
ggaaatggcatttcaattgagacattattaagatatgaaacaacagttcccattgtaggcctatcatctggattatcttggacacaaagtaaaccaattt |
160 |
Q |
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| T |
47619958 |
ggaaatggcagttcaagtgagtgattagtaagatatgaaacgactgttgccattgtaggtctagcatttggattttcttggacacataataaaccaattt |
47619859 |
T |
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| Q |
161 |
g |
161 |
Q |
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| T |
47619858 |
g |
47619858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 146
Target Start/End: Complemental strand, 47594048 - 47593988
Alignment:
| Q |
86 |
tattaagatatgaaacaacagttcccattgtaggcctatcatctggattatcttggacaca |
146 |
Q |
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| T |
47594048 |
tattaagatatgaaacaaccgttgccattgtaggtcttacatttggattttcttgaacaca |
47593988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 47637165 - 47637117
Alignment:
| Q |
110 |
ccattgtaggcctatcatctggattatcttggacacaaagtaaaccaat |
158 |
Q |
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| T |
47637165 |
ccattgtaggtctatcttctggatcttcttggacacatagtaaaccaat |
47637117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 161
Target Start/End: Original strand, 453451 - 453539
Alignment:
| Q |
73 |
tcaattgagacattattaagatatgaaacaacagttcccattgtaggcctatcatctggattatcttggacacaaagtaaaccaatttg |
161 |
Q |
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|||| ||| |||||| | ||||||||||||| || ||||||| || |||||||||||||| | ||| ||||| | |||||||||||| |
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| T |
453451 |
tcaactgaaacattactcagatatgaaacaattctttccattgttggtctatcatctggattttgttgcacacataataaaccaatttg |
453539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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