View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16020_high_75 (Length: 303)
Name: NF16020_high_75
Description: NF16020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16020_high_75 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 16 - 295
Target Start/End: Original strand, 40127919 - 40128198
Alignment:
| Q |
16 |
agtgctgtgtttagttttggtgttgtgcttcttgagctattgagtggaagaaaggctcttcaaacgaacgatgacggacaaccttctgctttgactgatt |
115 |
Q |
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| T |
40127919 |
agtgatgtgtttagttttggtgttgtgcttcttgagctattgagtggaagaaaggctcttcaaacgaacgatgacggacaaccttctgctttgactgatt |
40128018 |
T |
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| Q |
116 |
gggcttggtcattggttcgaatgggaaaggcattggatgttattgaagatgggatgccagaacaaggttcagatcaagttcttgagaagtatgtgttgat |
215 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40128019 |
gggcttggtcattggttcgaacgggaaaggcattggatgttattgaagatgggatgccagaacaaggttcagatcaagttcttgagaagtatgtgttgat |
40128118 |
T |
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| Q |
216 |
tgccgtgctttgttctcatccacagttatatgctaggccaacaatggatcaggttgttaaaatgatggagactgatgatg |
295 |
Q |
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| T |
40128119 |
tgccgtgctttgttctcatccacagttatatgctaggccaacaatggatcaggttgttaaaatgatggagactgatgatg |
40128198 |
T |
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Target: chr7 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 16 - 295
Target Start/End: Original strand, 37456069 - 37456348
Alignment:
| Q |
16 |
agtgctgtgtttagttttggtgttgtgcttcttgagctattgagtggaagaaaggctcttcaaacgaacgatgacggacaaccttctgctttgactgatt |
115 |
Q |
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|||| |||||||||||| |||||| ||||||| ||||| ||||||||||||||||| ||| ||||||| || || || ||||| |||||||| | ||| | |
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| T |
37456069 |
agtgatgtgtttagtttcggtgttttgcttctcgagcttttgagtggaagaaaggcgcttgaaacgaatgaggatggtcaaccctctgctttcagtgact |
37456168 |
T |
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| Q |
116 |
gggcttggtcattggttcgaatgggaaaggcattggatgttattgaagatgggatgccagaacaaggttcagatcaagttcttgagaagtatgtgttgat |
215 |
Q |
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| T |
37456169 |
tggcttggtcgttggttagaaacaatagggccttggatgttattgaagatggtatgccagaacctggtacaccagaaattctcgagaagtatgtgttggt |
37456268 |
T |
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| Q |
216 |
tgccgtgctttgttctcatccacagttatatgctaggccaacaatggatcaggttgttaaaatgatggagactgatgatg |
295 |
Q |
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||| || | ||||| ||||||||||||||||| |||||||| ||||||||||| ||||||||| ||||||| ||||||| |
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| T |
37456269 |
tgctgttttatgttcacatccacagttatatgcgaggccaacgatggatcaggtcgttaaaatgctggagacagatgatg |
37456348 |
T |
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