View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16020_high_77 (Length: 300)
Name: NF16020_high_77
Description: NF16020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16020_high_77 |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 283
Target Start/End: Original strand, 4774362 - 4774626
Alignment:
| Q |
19 |
acttacgaagaattatatcaattttttatttggaagaaaataatagaataatttgacatttatacaagtaaattgtttatgatggtgctcgtgaatttac |
118 |
Q |
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| T |
4774362 |
acttacgaagaattatatcaattttttatttggaagaaaataatagaataatttgacatttatacaagtaaattgtttatgatggtgctcgtgaatttac |
4774461 |
T |
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| Q |
119 |
tttgctttcctttctaaataaatagaagtggaaaaagatccagttgtnnnnnnnntttatgataataaattaatgcgtgtaagcgtgtgaaattatgtga |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4774462 |
tttgctttcctttctaaataaatagaagtggaaaaagatccagttgtaaataaattttatgataataaattaatgcgtgtaagcgtgtgaaattatgtga |
4774561 |
T |
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| Q |
219 |
ttagtgttggcatatacgaatatgctgagaatcgtgagatcataagatgaatgagacatgtaagt |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4774562 |
ttagtgttggcatatacgaatatgctgagaatcgtgagatcataagatgaatgagacatgtaagt |
4774626 |
T |
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