View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16020_high_78 (Length: 300)
Name: NF16020_high_78
Description: NF16020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16020_high_78 |
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Alignment Details
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 150 - 290
Target Start/End: Complemental strand, 38419379 - 38419239
Alignment:
| Q |
150 |
cttgtttaatagagtttgcccttaaaaaattattatccactaaggtgaaaattcttaaataattatttaattaattttcaactatttagtatactaaata |
249 |
Q |
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| T |
38419379 |
cttgtttaatagagtttgcccttaataaattattatccactaaggtgaaaattcttaaataattatttaattaattttcaactatttagtatactaaata |
38419280 |
T |
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| Q |
250 |
agctgccaagtgccaccaatctctttaccttgcttgttcat |
290 |
Q |
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| T |
38419279 |
agctgccaagtgccaccaatctctttaccttgcttgttcat |
38419239 |
T |
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Target: chr3; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 38419513 - 38419445
Alignment:
| Q |
16 |
gttatccttctacgactctcccccaggccaccattggcaccgactatgacttaaactcaaactagcctc |
84 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38419513 |
gttatccttctacgactctcccccaggccaccattggcaccgactatgacttaaactcaaactagcctc |
38419445 |
T |
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