View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16020_high_80 (Length: 294)
Name: NF16020_high_80
Description: NF16020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16020_high_80 |
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Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 3 - 279
Target Start/End: Original strand, 25892571 - 25892847
Alignment:
| Q |
3 |
caacagagacagacggcaaaaacatgcgaattgctaacaacattgttgacagaaagaatgataaggaatatacagatatgatccttacattgtgctagac |
102 |
Q |
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||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25892571 |
caacagaaacagccggcacaaacatgcgaattgctaacaacattgttgacagaaagaatgataaggaatatacagatatgatccttacattgtgctagac |
25892670 |
T |
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| Q |
103 |
attattacaaatgatagtaatgagagagagatttagtcaagcaatctgtgatttggtcagctgtacgtaggaacataagctattgtgattttatcaagtt |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25892671 |
attattacaaatgatagtaatgagagagagatttagtcaagcaatctgtgatttggtcagctgtacgtaggaacataagctattgtgattttatcaagtt |
25892770 |
T |
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| Q |
203 |
gatctcttacataatgaacatcaatttcaatgtgtttgaaacgagcatgcataaccagattggatgcaagtgcctta |
279 |
Q |
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| T |
25892771 |
gatctcttacataatgaacatcaatttcaatgtgtttgaaacgagcatgcataaccggattggatgcaagtgcctta |
25892847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 121 - 279
Target Start/End: Complemental strand, 25818562 - 25818399
Alignment:
| Q |
121 |
aatgagagagagatttagtcaagcaatctgtgatttggtcagctgtacgtaggaacataagctattgtgattttatcaagt------tgatctcttacat |
214 |
Q |
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| T |
25818562 |
aatgagtgagggatttagtcaagcaatctgcgatttggtcagctgta----ggaacataagctattgtgattttatcttgtagcacttgatctcttacat |
25818467 |
T |
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| Q |
215 |
aatgaacatcaatttcaatgtgt---ttgaaacgagcatgcataaccagattggatgcaagtgcctta |
279 |
Q |
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| T |
25818466 |
aatgcacatcaatttcaatgtgtaatttggaacgagcatgcataaccggattggatgcaagtgcctta |
25818399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 113
Target Start/End: Complemental strand, 25814477 - 25814433
Alignment:
| Q |
69 |
aatatacagatatgatccttacattgtgctagacattattacaaa |
113 |
Q |
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||||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
25814477 |
aatatacagatataatccttacattgtgctaagcattattacaaa |
25814433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 113
Target Start/End: Complemental strand, 25818780 - 25818736
Alignment:
| Q |
69 |
aatatacagatatgatccttacattgtgctagacattattacaaa |
113 |
Q |
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||||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
25818780 |
aatatacagatataatccttacattgtgctaagcattattacaaa |
25818736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 279
Target Start/End: Original strand, 34763583 - 34763661
Alignment:
| Q |
201 |
ttgatctcttacataatgaacatcaatttcaatgtgtttgaaacgagcatgcataaccagattggatgcaagtgcctta |
279 |
Q |
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||||||||||| | |||||||| ||||||||||||||| | | ||||||||||| |||| ||||||||||||||| |
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| T |
34763583 |
ttgatctcttatgaagtgaacatctatttcaatgtgtttggacctagcatgcataataggatttgatgcaagtgcctta |
34763661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 279
Target Start/End: Original strand, 29457516 - 29457594
Alignment:
| Q |
201 |
ttgatctcttacataatgaacatcaatttcaatgtgtttgaaacgagcatgcataaccagattggatgcaagtgcctta |
279 |
Q |
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||||||||||| | |||||||| ||||||||||||||| | | ||||||||||| |||| ||||||||||||||| |
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| T |
29457516 |
ttgatctcttatgaagtgaacatctatttcaatgtgtttggacctagcatgcataataggatttgatgcaagtgcctta |
29457594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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