View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16020_high_81 (Length: 294)
Name: NF16020_high_81
Description: NF16020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16020_high_81 |
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| [»] chr7 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 14 - 294
Target Start/End: Original strand, 34841632 - 34841912
Alignment:
| Q |
14 |
agaggtggatgagcaaatgataaatgtccagaacaagaactcttcctactttgttgagtggatccccaacaatgttaagtcaagtgtttgcgacattgct |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
34841632 |
agaggtggatgagcaaatgataaatgtccagaacaagaactcttcctactttgttgagtggatccccaacaatgttaagtcaagtgtttgtgacattgct |
34841731 |
T |
|
| Q |
114 |
cctagaggtctctccatggcctccacctttatcggtaactcaacctcaattcaggaaatgtttaggagggtgagcgagcaatttaccgctatgtttagga |
213 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34841732 |
cctagaggtctctccatggcctccacctttatcggtaactcaacctcaattcaggaaatgtttaggagggtgagcgagcaatttaccgctatgtttagga |
34841831 |
T |
|
| Q |
214 |
ggaaggctttcttgcattggtacactggtgaaggcatggatgaaatggaattcacagaagcagagagcaacatgaatgacc |
294 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34841832 |
ggaaggctttcttgcattggtacactggtgaaggcatggatgaaatggaattcacagaagcagagagcaacatgaatgacc |
34841912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 3e-48; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 15 - 292
Target Start/End: Original strand, 5532564 - 5532841
Alignment:
| Q |
15 |
gaggtggatgagcaaatgataaatgtccagaacaagaactcttcctactttgttgagtggatccccaacaatgttaagtcaagtgtttgcgacattgctc |
114 |
Q |
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||||| ||||| |||||||| |||||||||||||||||||| |||||||||||||| ||||| || |||||||| ||||| | ||| || || ||| | | |
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| T |
5532564 |
gaggttgatgaacaaatgatgaatgtccagaacaagaactcatcctactttgttgaatggattccaaacaatgtgaagtctactgtctgtgatattcccc |
5532663 |
T |
|
| Q |
115 |
ctagaggtctctccatggcctccacctttatcggtaactcaacctcaattcaggaaatgtttaggagggtgagcgagcaatttaccgctatgtttaggag |
214 |
Q |
| |
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| | ||| | ||||| || || || || || ||||| || || |||||||||||||| | |||||||| ||||| || || |||||||| ||||| |
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| T |
5532664 |
caacagggttgaaaatggcttcaacattcattggaaactccacatccattcaggaaatgttccgtagggtgagtgagcagttcactgctatgttcaggag |
5532763 |
T |
|
| Q |
215 |
gaaggctttcttgcattggtacactggtgaaggcatggatgaaatggaattcacagaagcagagagcaacatgaatga |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||| || || ||||||||||||||||| |
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| T |
5532764 |
aaaggctttcttgcattggtacactggtgaaggcatggacgaaatggaattcactgaggctgagagcaacatgaatga |
5532841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 21 - 292
Target Start/End: Complemental strand, 5934923 - 5934652
Alignment:
| Q |
21 |
gatgagcaaatgataaatgtccagaacaagaactcttcctactttgttgagtggatccccaacaatgttaagtcaagtgtttgcgacattgctcctagag |
120 |
Q |
| |
|
||||| |||||||| ||||| |||||||||||||| |||||||| ||||| ||||| || |||||||| || |||| |||||| || ||| | || | || |
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|
| T |
5934923 |
gatgaacaaatgatcaatgttcagaacaagaactcatcctacttcgttgaatggattccaaacaatgtcaaatcaactgtttgtgatattccaccaacag |
5934824 |
T |
|
| Q |
121 |
gtctctccatggcctccacctttatcggtaactcaacctcaattcaggaaatgtttaggagggtgagcgagcaatttaccgctatgtttaggaggaaggc |
220 |
Q |
| |
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| | ||||| || || || ||||| |||||||| |||||||| |||||||| | |||||||| ||||| ||||| |||||||| ||||| ||||| |
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| T |
5934823 |
ggttgaagatggcttctacattcatcggaaactcaacttcaattcaagaaatgttccgaagggtgagtgagcagtttactgctatgttcaggagaaaggc |
5934724 |
T |
|
| Q |
221 |
tttcttgcattggtacactggtgaaggcatggatgaaatggaattcacagaagcagagagcaacatgaatga |
292 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||| ||||| ||||| || || ||||||||||||||||| |
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| T |
5934723 |
tttcttgcattggtacacaggtgaaggaatggatgagatggagttcactgaggctgagagcaacatgaatga |
5934652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 21 - 292
Target Start/End: Complemental strand, 5921463 - 5921192
Alignment:
| Q |
21 |
gatgagcaaatgataaatgtccagaacaagaactcttcctactttgttgagtggatccccaacaatgttaagtcaagtgtttgcgacattgctcctagag |
120 |
Q |
| |
|
||||| |||||||| ||||| |||||||||||||| |||||||| || || ||||| || |||||||| || |||| |||||| || ||| | || | || |
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| T |
5921463 |
gatgaacaaatgatcaatgttcagaacaagaactcatcctacttcgtcgaatggattccaaacaatgtcaaatcaactgtttgtgatattccaccaacag |
5921364 |
T |
|
| Q |
121 |
gtctctccatggcctccacctttatcggtaactcaacctcaattcaggaaatgtttaggagggtgagcgagcaatttaccgctatgtttaggaggaaggc |
220 |
Q |
| |
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| | ||||| || || || ||||| |||||||| |||||||| |||||||| | |||||||| ||||| ||||| |||||||| ||||| ||||| |
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| T |
5921363 |
ggttgaagatggcttctacattcatcggaaactcaacttcaattcaagaaatgttccgaagggtgagtgagcagtttactgctatgttcaggagaaaggc |
5921264 |
T |
|
| Q |
221 |
tttcttgcattggtacactggtgaaggcatggatgaaatggaattcacagaagcagagagcaacatgaatga |
292 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||| ||||| ||||| || || ||||||||||||||||| |
|
|
| T |
5921263 |
tttcttgcattggtacacaggtgaaggaatggatgagatggagttcactgaggctgagagcaacatgaatga |
5921192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 15 - 292
Target Start/End: Complemental strand, 38177253 - 38176976
Alignment:
| Q |
15 |
gaggtggatgagcaaatgataaatgtccagaacaagaactcttcctactttgttgagtggatccccaacaatgttaagtcaagtgtttgcgacattgctc |
114 |
Q |
| |
|
|||||||| ||||| ||||| ||||| |||||||| |||||||| ||||||||||||||||| |||||||| || ||||| || || || || || | | |
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| T |
38177253 |
gaggtggacgagcagatgattaatgtacagaacaaaaactcttcttactttgttgagtggatacccaacaacgtcaagtctagcgtgtgtgatataccac |
38177154 |
T |
|
| Q |
115 |
ctagaggtctctccatggcctccacctttatcggtaactcaacctcaattcaggaaatgtttaggagggtgagcgagcaatttaccgctatgtttaggag |
214 |
Q |
| |
|
| | ||||| |||| ||||| || || || || ||||| || ||||| || ||||| ||||| || |||||||| || || |||||||||||| | |
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|
| T |
38177153 |
caacgggtcttaagttggcatccactttcattggcaattcaacatctattcaagagatgttcaggagagtcagcgagcagttcacagctatgtttaggcg |
38177054 |
T |
|
| Q |
215 |
gaaggctttcttgcattggtacactggtgaaggcatggatgaaatggaattcacagaagcagagagcaacatgaatga |
292 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||||||||| ||||| || || ||||| ||||||||||| |
|
|
| T |
38177053 |
caaggctttcttgcattggtacactggtgagggaatggatgaaatggagttcactgaggccgagagtaacatgaatga |
38176976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 258
Target Start/End: Complemental strand, 37088829 - 37088772
Alignment:
| Q |
201 |
gctatgtttaggaggaaggctttcttgcattggtacactggtgaaggcatggatgaaa |
258 |
Q |
| |
|
|||||||||||| | |||||||||||| |||||||| ||||||| || ||||| |||| |
|
|
| T |
37088829 |
gctatgtttaggcgcaaggctttcttgtattggtacgctggtgagggaatggaagaaa |
37088772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 15 - 294
Target Start/End: Complemental strand, 45452671 - 45452392
Alignment:
| Q |
15 |
gaggtggatgagcaaatgataaatgtccagaacaagaactcttcctactttgttgagtggatccccaacaatgttaagtcaagtgtttgcgacattgctc |
114 |
Q |
| |
|
||||| |||||||| ||||| ||||| ||||||||||| || || ||||||||||||||||| ||||||||||| || || | ||| || || || ||| |
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|
| T |
45452671 |
gaggttgatgagcagatgatcaatgttcagaacaagaattcatcatactttgttgagtggattcccaacaatgtgaaatccactgtctgtgatatccctc |
45452572 |
T |
|
| Q |
115 |
ctagaggtctctccatggcctccacctttatcggtaactcaacctcaattcaggaaatgtttaggagggtgagcgagcaatttaccgctatgtttaggag |
214 |
Q |
| |
|
| | ||||| ||||| || || ||||| |||||||| || || ||||| |||||||||||||||||||| |||||||| || |||||||| | || |
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|
| T |
45452571 |
caactggtcttaaaatggcttctacttttattggtaactccacatctattcaagaaatgtttaggagggtgagtgagcaattcacggctatgttccgcag |
45452472 |
T |
|
| Q |
215 |
gaaggctttcttgcattggtacactggtgaaggcatggatgaaatggaattcacagaagcagagagcaacatgaatgacc |
294 |
Q |
| |
|
|| ||||||||||||||||| ||||| || || |||||||| ||||| || || |||||||| |||||||||||||||| |
|
|
| T |
45452471 |
aaaagctttcttgcattggtatactggagagggtatggatgagatggagtttactgaagcagaaagcaacatgaatgacc |
45452392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 21 - 292
Target Start/End: Complemental strand, 11732103 - 11731832
Alignment:
| Q |
21 |
gatgagcaaatgataaatgtccagaacaagaactcttcctactttgttgagtggatccccaacaatgttaagtcaagtgtttgcgacattgctcctagag |
120 |
Q |
| |
|
|||||||| ||||| ||||| || |||||||||||||| ||||||||||||||||| || || ||||||||||| || || || || || | || | | |
|
|
| T |
11732103 |
gatgagcagatgatcaatgtgcaaaacaagaactcttcatactttgttgagtggataccaaataatgttaagtccagcgtatgtgatatcccaccaaagg |
11732004 |
T |
|
| Q |
121 |
gtctctccatggcctccacctttatcggtaactcaacctcaattcaggaaatgtttaggagggtgagcgagcaatttaccgctatgtttaggaggaaggc |
220 |
Q |
| |
|
| || ||||| || || || |||||||| ||||| || || ||||| ||||| ||||| || || ||||| || || |||||||||||| | ||||| |
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|
| T |
11732003 |
gccttaagatggcatcaactttcatcggtaattcaacttcgatccaggagatgttcaggagagttagtgagcagttcacagctatgtttaggcgcaaggc |
11731904 |
T |
|
| Q |
221 |
tttcttgcattggtacactggtgaaggcatggatgaaatggaattcacagaagcagagagcaacatgaatga |
292 |
Q |
| |
|
|||||||||||||||||||||||| || ||||| |||||||| ||||| || || ||||| ||||||||||| |
|
|
| T |
11731903 |
tttcttgcattggtacactggtgagggaatggacgaaatggagttcactgaggctgagagtaacatgaatga |
11731832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 36 - 292
Target Start/End: Original strand, 45320361 - 45320617
Alignment:
| Q |
36 |
aatgtccagaacaagaactcttcctactttgttgagtggatccccaacaatgttaagtcaagtgtttgcgacattgctcctagaggtctctccatggcct |
135 |
Q |
| |
|
||||| ||||||||||| ||||| ||||| ||||| ||||| ||||| ||||| ||||| ||||| || || | | |||||||| || || ||||| | |
|
|
| T |
45320361 |
aatgtgcagaacaagaattcttcttacttcgttgaatggattcccaataatgtgaagtccagtgtctgtgatgtcccacctagaggcctttcgatggctt |
45320460 |
T |
|
| Q |
136 |
ccacctttatcggtaactcaacctcaattcaggaaatgtttaggagggtgagcgagcaatttaccgctatgtttaggaggaaggctttcttgcattggta |
235 |
Q |
| |
|
| || ||| | || || || || || || ||||| ||||||||||| ||||| || || || | || ||||| || ||||| || |||||||||||||| |
|
|
| T |
45320461 |
cgacatttgttggcaattcgacatctatacaggagatgtttaggagagtgagtgaacagttctctgccatgttcagaaggaaagcattcttgcattggta |
45320560 |
T |
|
| Q |
236 |
cactggtgaaggcatggatgaaatggaattcacagaagcagagagcaacatgaatga |
292 |
Q |
| |
|
|| || ||||| ||||||||||||||||| || |||||||| ||||| |||||||| |
|
|
| T |
45320561 |
taccggagaaggaatggatgaaatggaatttactgaagcagaaagcaatatgaatga |
45320617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 292
Target Start/End: Complemental strand, 40916522 - 40916260
Alignment:
| Q |
30 |
atgataaatgtccagaacaagaactcttcctactttgttgagtggatccccaacaatgttaagtcaagtgtttgcgacattgctcctagaggtctctcca |
129 |
Q |
| |
|
||||||||||| |||||||||||||| || |||||||| || ||||| || |||||||| || ||||||||||| || ||| | || | ||| | || | |
|
|
| T |
40916522 |
atgataaatgttcagaacaagaactcgtcttactttgtggaatggattccaaacaatgtgaaatcaagtgtttgtgatattccgccaacagggttgtcga |
40916423 |
T |
|
| Q |
130 |
tggcctccacctttatcggtaactcaacctcaattcaggaaatgtttaggagggtgagcgagcaatttaccgctatgtttaggaggaaggctttcttgca |
229 |
Q |
| |
|
|| | || || ||||| || || || || || ||||| ||||||||||| | || ||||| ||||| | |||||||| ||| ||||| || ||||| |
|
|
| T |
40916422 |
tgtcttcgacatttatggggaattcgacatctattcaagaaatgtttagacgtgtttcggagcagtttactgttatgtttaagagaaaggcatttttgca |
40916323 |
T |
|
| Q |
230 |
ttggtacactggtgaaggcatggatgaaatggaattcacagaagcagagagcaacatgaatga |
292 |
Q |
| |
|
|||||| |||| |||||| |||||||| ||||| || || || || ||||| || |||||||| |
|
|
| T |
40916322 |
ttggtatactgctgaaggaatggatgagatggagtttactgaggctgagagtaatatgaatga |
40916260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 289
Target Start/End: Complemental strand, 53146266 - 53145991
Alignment:
| Q |
14 |
agaggtggatgagcaaatgataaatgtccagaacaagaactcttcctactttgttgagtggatccccaacaatgttaagtcaagtgtttgcgacattgct |
113 |
Q |
| |
|
|||||| ||||| ||||| || ||||| ||||||||||| ||||| ||||||||||| ||||| ||||||||||| ||||| ||||| || || || | |
|
|
| T |
53146266 |
agaggttgatgaacaaatcatcaatgtgcagaacaagaattcttcatactttgttgaatggattcccaacaatgtgaagtctagtgtgtgtgatatccca |
53146167 |
T |
|
| Q |
114 |
cctagaggtctctccatggcctccacctttatcggtaactcaacctcaattcaggaaatgtttaggagggtgagcgagcaatttaccgctatgtttagga |
213 |
Q |
| |
|
|| | | | ||| | ||||| ||||| || ||||| || ||||||||||| ||||| |||||||| || ||||| ||||| || ||||| || |
|
|
| T |
53146166 |
cccaagaatttgaagatgtcgtccacttttattgggaactctacttcaattcaggagatgttcaggagggtcagtgagcagtttactgcaatgttccggc |
53146067 |
T |
|
| Q |
214 |
ggaaggctttcttgcattggtacactggtgaaggcatggatgaaatggaattcacagaagcagagagcaacatgaa |
289 |
Q |
| |
|
| ||||| || ||||||||||| ||||| || || |||||||| ||||| ||||| || ||||| || |||||||| |
|
|
| T |
53146066 |
gcaaggcctttttgcattggtatactggggagggaatggatgagatggagttcacggaggcagaaagtaacatgaa |
53145991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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