View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16020_high_9 (Length: 611)

Name: NF16020_high_9
Description: NF16020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16020_high_9
NF16020_high_9
[»] chr3 (12 HSPs)
chr3 (1-592)||(11614975-11615573)
chr3 (43-287)||(13752267-13752511)
chr3 (43-287)||(13765670-13765914)
chr3 (39-261)||(11606079-11606302)
chr3 (39-287)||(13738832-13739074)
chr3 (458-590)||(11605692-11605824)
chr3 (458-590)||(13766164-13766296)
chr3 (458-590)||(13752761-13752893)
chr3 (297-371)||(13739111-13739185)
chr3 (298-371)||(11605931-11606004)
chr3 (318-371)||(13752581-13752634)
chr3 (318-371)||(13765984-13766037)
[»] chr6 (3 HSPs)
chr6 (47-287)||(35079773-35080010)
chr6 (458-560)||(35079380-35079482)
chr6 (296-413)||(35079606-35079725)


Alignment Details
Target: chr3 (Bit Score: 496; Significance: 0; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 1 - 592
Target Start/End: Original strand, 11614975 - 11615573
Alignment:
Q  1 attggtgcatcaaactaaaatcatataacgtgtaaggttgatttaattaaaattttatgtaccttgcttaggttcaacagatttagcatgagagcgcttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11614975 attggtgcatcaaactaaaatcatataacgtgtaaggttgatttaattaaaattttatgtaccttgcttaggttcaacagatttagcatgagagcgcttc 11615074  T
Q  101 ttcctcgtgtagttttcttgcaatgacgtaggcacttcaaacgagaaccgtgcaggagttacaccatttttcttgtactctggatgatacgccaagaacc 200  Q
    |||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11615075 ttcctcatgtagttttcttgcaatggcgtaggcacttcaaatgagaaccgtgcaggagttacaccatttttcttgtactctggatgatacgccaagaacc 11615174  T
Q  201 ttaaaatacaagcatggggagcaaaatataagaaagatgaaagccaatttttaataatgataaggacgatagttcaattaagacaagatagatttgaaca 300  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11615175 ttaaaatacaagcatggggagaaaaatataagaaagatgaaagccaatttttaataatgataaggacgatagttcaattaagacaagatagatttgaaca 11615274  T
Q  301 tacctcttgacctcgaccattgagcgcaatttcttgcttgatggtgctatatagtatctgaaatatc-aaaattcgcaagagtgataaaacgatgaaaaa 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||  ||    
T  11615275 tacctcttgacctcgaccattgagcgcaatttcttgcttgatggtgctatatagtatctgaaatatcaaaaaatcgcaagagtgataaaatgatgatgaa 11615374  T
Q  400 caaattagaaattcatagccaaaattcataatagtggtatt----gctacata--nnnnnnnnnatacttacatatctgcaaatttgctacttccttcag 493  Q
    ||||||||||||||||||||||||||||||| |||||||||    ||||||||           ||||||||||||||||||||||||||||||||||||    
T  11615375 caaattagaaattcatagccaaaattcataaaagtggtattgctagctacatatgtttttttttatacttacatatctgcaaatttgctacttccttcag 11615474  T
Q  494 atctgattcgtagcagtcgctgccatccatgtggagtttgtggaatgtctgccttgtcaatagcccagatcaaattgttatcctgagaaacatcctccg 592  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11615475 atctgattcgtagcagtcgttgccatccatgtggagtttgtggaatgtctgccttgtcaatagcccagatcaaattgttatcctgagaaacatcctccg 11615573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 43 - 287
Target Start/End: Original strand, 13752267 - 13752511
Alignment:
Q  43 ttaattaaaattttatgtaccttgcttaggttcaacagatttagcatgagagcgcttcttcctcgtgtagttttcttgcaatgacgtaggcacttcaaac 142  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||   ||||| |||||||| | | |||||| || |||     
T  13752267 ttaattaaaattttacgtaccttgattaggttcaacagatttagcatgagagcgcttcttcttcacatagttctcttgcaagggcttaggcatttgaaat 13752366  T
Q  143 gagaaccgtgcaggagttacaccatttttcttgtactctggatgatacgccaagaaccttaaaatacaagcatggggagcaaaatataagaaagatgaaa 242  Q
    ||||||||||||| ||| ||||||| | || ||||||||| ||||| | ||||||||||||||| |||||||  ||||||||||| ||||||||||||||    
T  13752367 gagaaccgtgcagaagtaacaccatctgtcgtgtactctgaatgattcaccaagaaccttaaaacacaagcaccgggagcaaaatgtaagaaagatgaaa 13752466  T
Q  243 gccaatttttaataatgataaggacgatagttcaattaagacaag 287  Q
    |||||  |||||||||||  | ||| ||  |||||||||||||||    
T  13752467 gccaaaatttaataatgaagatgacaatgattcaattaagacaag 13752511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 43 - 287
Target Start/End: Original strand, 13765670 - 13765914
Alignment:
Q  43 ttaattaaaattttatgtaccttgcttaggttcaacagatttagcatgagagcgcttcttcctcgtgtagttttcttgcaatgacgtaggcacttcaaac 142  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||   ||||| |||||||| | | |||||  || |||     
T  13765670 ttaattaaaattttacgtaccttggttaggttcaacagatttagcatgagagcgcttcttcttcacatagttctcttgcaagggcttaggcttttgaaat 13765769  T
Q  143 gagaaccgtgcaggagttacaccatttttcttgtactctggatgatacgccaagaaccttaaaatacaagcatggggagcaaaatataagaaagatgaaa 242  Q
    ||||||||||||| ||| ||||||| | || ||||||||| ||||| | ||||||||||||||| |||||||  ||||||||||| ||||||||||||||    
T  13765770 gagaaccgtgcagaagtaacaccatctgtcgtgtactctgaatgattcaccaagaaccttaaaacacaagcaccgggagcaaaatgtaagaaagatgaaa 13765869  T
Q  243 gccaatttttaataatgataaggacgatagttcaattaagacaag 287  Q
    |||||  |||||||||||  | ||| || ||||||||||||||||    
T  13765870 gccaaaatttaataatgaagatgacaatggttcaattaagacaag 13765914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 39 - 261
Target Start/End: Complemental strand, 11606302 - 11606079
Alignment:
Q  39 tgatttaattaaaattttatgtaccttgcttaggttcaacagatttagcatgagagcgcttcttcctcgtgtagttttcttgcaatgacgtaggcacttc 138  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||  |||||| |||||||| | | |||||| ||     
T  11606302 tgatttagttaaaaatttatgtaccttgcttaggttcaacagatttagcatgagaacgcttcttcttcacgtagttctcttgcaagggcttaggcatttg 11606203  T
Q  139 aaacgagaaccgtgcaggagttacaccatttttcttgtactctggatgatacgccaagaaccttaaaatacaagcatggggagcaaaatataagaaaga- 237  Q
    ||| ||||||||||||| ||||||||||||| ||  ||||||||||||||  || ||||||||| ||| |||||||  |||| | |||| |||||||||     
T  11606202 aaatgagaaccgtgcagaagttacaccatttgtcacgtactctggatgatcggcaaagaaccttcaaacacaagcaccgggaacgaaatgtaagaaagat 11606103  T
Q  238 tgaaagccaatttttaataatgat 261  Q
    |||||| | |||||||||||||||    
T  11606102 tgaaaggcgatttttaataatgat 11606079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 39 - 287
Target Start/End: Original strand, 13738832 - 13739074
Alignment:
Q  39 tgatttaattaaaattttatgtaccttgcttaggttcaacagatttagcatgagagcgcttcttcctcgtgtagttttcttgcaatgacgtaggcacttc 138  Q
    ||||||| ||||||||  |||||||||||||| ||||||| |||||||||||||||||||||   |||   ||| ||||||||   ||| ||||   ||     
T  13738832 tgatttagttaaaattgaatgtaccttgcttatgttcaaccgatttagcatgagagcgcttc---ctcacatagctttcttgc---gacttaggtctttt 13738925  T
Q  139 aaacgagaaccgtgcaggagttacaccatttttcttgtactctggatgatacgccaagaaccttaaaatacaagcatggggagcaaaatataagaaagat 238  Q
    ||| |||||||| | | |||||||||||| | || | |||||||||||||  |||||||||||||||| |||||||  ||||||||||| ||||||||||    
T  13738926 aaatgagaaccgcgaaagagttacaccatctgtcatatactctggatgatctgccaagaaccttaaaacacaagcaccgggagcaaaatgtaagaaagat 13739025  T
Q  239 gaaagccaatttttaataatgataaggacgatagttcaattaagacaag 287  Q
    ||||||||| ||||||||||||| | ||| ||  |||||||||| ||||    
T  13739026 gaaagccaaattttaataatgatgatgacaatgattcaattaagccaag 13739074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 458 - 590
Target Start/End: Complemental strand, 11605824 - 11605692
Alignment:
Q  458 atacttacatatctgcaaatttgctacttccttcagatctgattcgtagcagtcgctgccatccatgtggagtttgtggaatgtctgccttgtcaatagc 557  Q
    |||| ||||||||| |||||| ||| |||||||||  |||||||||||||||||||||||||||||  ||||  |||||||| |||| ||||||||||||    
T  11605824 atacatacatatctccaaattggctgcttccttcacctctgattcgtagcagtcgctgccatccatcgggagcctgtggaatttctggcttgtcaatagc 11605725  T
Q  558 ccagatcaaattgttatcctgagaaacatcctc 590  Q
    ||| |||| ||||||||||||||||||||||||    
T  11605724 ccaaatcatattgttatcctgagaaacatcctc 11605692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 458 - 590
Target Start/End: Original strand, 13766164 - 13766296
Alignment:
Q  458 atacttacatatctgcaaatttgctacttccttcagatctgattcgtagcagtcgctgccatccatgtggagtttgtggaatgtctgccttgtcaatagc 557  Q
    |||||||||||||| |||||| ||| |||||||||  ||| ||| ||||||||||||||||||||| |||||| ||||||||  ||| ||||||||||||    
T  13766164 atacttacatatctccaaattggctgcttccttcacctctaatttgtagcagtcgctgccatccatctggagtctgtggaattcctggcttgtcaatagc 13766263  T
Q  558 ccagatcaaattgttatcctgagaaacatcctc 590  Q
    ||| |||| | ||| ||||||||||||||||||    
T  13766264 ccaaatcatactgtcatcctgagaaacatcctc 13766296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 458 - 590
Target Start/End: Original strand, 13752761 - 13752893
Alignment:
Q  458 atacttacatatctgcaaatttgctacttccttcagatctgattcgtagcagtcgctgccatccatgtggagtttgtggaatgtctgccttgtcaatagc 557  Q
    |||| ||||||||| |||||| ||| |||||||||  ||| ||| ||||||||||||||||||||| |||||| ||||||||  ||| ||||||||||||    
T  13752761 atacatacatatctccaaattggctgcttccttcacctctaatttgtagcagtcgctgccatccatctggagtctgtggaattcctggcttgtcaatagc 13752860  T
Q  558 ccagatcaaattgttatcctgagaaacatcctc 590  Q
    ||| |||| | ||| ||||||||||||||||||    
T  13752861 ccaaatcatactgtcatcctgagaaacatcctc 13752893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 297 - 371
Target Start/End: Original strand, 13739111 - 13739185
Alignment:
Q  297 aacatacctcttgacctcgaccattgagcgcaatttcttgcttgatggtgctatatagtatctgaaatatcaaaa 371  Q
    ||||||| |||||||||||  |||||||||||||||||||| ||||||||||  |||||||||||||||| ||||    
T  13739111 aacatacttcttgacctcgggcattgagcgcaatttcttgcctgatggtgcttcatagtatctgaaatattaaaa 13739185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 298 - 371
Target Start/End: Complemental strand, 11606004 - 11605931
Alignment:
Q  298 acatacctcttgacctcgaccattgagcgcaatttcttgcttgatggtgctatatagtatctgaaatatcaaaa 371  Q
    |||||| ||| |||||||  |||||||||||||||||||| |||||||||| |||||||||| |||||| ||||    
T  11606004 acatacttctcgacctcgggcattgagcgcaatttcttgcctgatggtgctttatagtatctaaaatataaaaa 11605931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 318 - 371
Target Start/End: Original strand, 13752581 - 13752634
Alignment:
Q  318 cattgagcgcaatttcttgcttgatggtgctatatagtatctgaaatatcaaaa 371  Q
    |||||||||||||||||||| ||||||||||  |||||||||||||||| ||||    
T  13752581 cattgagcgcaatttcttgcctgatggtgcttcatagtatctgaaatattaaaa 13752634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 318 - 371
Target Start/End: Original strand, 13765984 - 13766037
Alignment:
Q  318 cattgagcgcaatttcttgcttgatggtgctatatagtatctgaaatatcaaaa 371  Q
    |||||||||||||||||||| ||||||||||  |||||||||||||||| ||||    
T  13765984 cattgagcgcaatttcttgcctgatggtgcttcatagtatctgaaatattaaaa 13766037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 2e-41; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 47 - 287
Target Start/End: Complemental strand, 35080010 - 35079773
Alignment:
Q  47 ttaaaattttatgtaccttgcttaggttcaacagatttagcatgagagcgcttcttcctcgtgtagttttcttgcaatgacgtaggcacttcaaacgaga 146  Q
    ||||||| |||||||||||||| |||||||| ||||||||||||||||||||||   |||   |||||||||||||||| | |||| | ||  || ||||    
T  35080010 ttaaaatgttatgtaccttgctcaggttcaatagatttagcatgagagcgcttc---ctcacatagttttcttgcaatggcttaggaatttggaatgaga 35079914  T
Q  147 accgtgcaggagttacaccatttttcttgtactctggatgatacgccaagaaccttaaaatacaagcatggggagcaaaatataagaaagatgaaagcca 246  Q
    ||||||||||||||||||||  | || ||||||| ||||| | ||||||||| ||||||| |||||||   |||||||||| ||||||||||||||| |     
T  35079913 accgtgcaggagttacaccagctgtcatgtactcaggatgttccgccaagaatcttaaaacacaagcaccaggagcaaaatgtaagaaagatgaaagacg 35079814  T
Q  247 atttttaataatgataaggacgatagttcaattaagacaag 287  Q
    ||  ||||||||||| |  || ||| |||||||||||||||    
T  35079813 atgattaataatgatgataacaataattcaattaagacaag 35079773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 458 - 560
Target Start/End: Complemental strand, 35079482 - 35079380
Alignment:
Q  458 atacttacatatctgcaaatttgctacttccttcagatctgattcgtagcagtcgctgccatccatgtggagtttgtggaatgtctgccttgtcaatagc 557  Q
    |||| ||||| ||||| |||||||| |||||||||  ||||||||||||||||||||||||||||| ||||| ||||| ||||  || ||| ||||||||    
T  35079482 atacatacatgtctgcgaatttgctgcttccttcacctctgattcgtagcagtcgctgccatccatctggaggttgtgcaatgcttggcttatcaatagc 35079383  T
Q  558 cca 560  Q
    |||    
T  35079382 cca 35079380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 296 - 413
Target Start/End: Complemental strand, 35079725 - 35079606
Alignment:
Q  296 gaacatacctcttgacctcgaccattgagcgcaatttcttgcttgatggtgctatatagtatctgaaatat--caaaattcgcaagagtgataaaacgat 393  Q
    |||||||| | | |||||||||||||||||||| |||||| |  |||||||||  ||||||||||||||||   |||| ||  || ||||| |||| |||    
T  35079725 gaacatacttgtggacctcgaccattgagcgcagtttctttccggatggtgcttcatagtatctgaaatattaaaaaaatcagaacagtgacaaaatgat 35079626  T
Q  394 gaaaaacaaattagaaattc 413  Q
    || |||||||||| ||||||    
T  35079625 gataaacaaattataaattc 35079606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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