View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16020_high_92 (Length: 270)

Name: NF16020_high_92
Description: NF16020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16020_high_92
NF16020_high_92
[»] scaffold0024 (3 HSPs)
scaffold0024 (9-255)||(114492-114739)
scaffold0024 (115-255)||(121263-121399)
scaffold0024 (38-89)||(121456-121507)
[»] chr6 (3 HSPs)
chr6 (119-163)||(10890406-10890450)
chr6 (119-166)||(29246413-29246460)
chr6 (119-149)||(7712316-7712346)
[»] chr1 (5 HSPs)
chr1 (119-163)||(32581076-32581120)
chr1 (121-166)||(19808813-19808858)
chr1 (101-153)||(28820873-28820926)
chr1 (129-158)||(30066510-30066539)
chr1 (119-151)||(19809049-19809081)
[»] chr4 (3 HSPs)
chr4 (119-166)||(6986692-6986739)
chr4 (119-158)||(40829676-40829715)
chr4 (122-158)||(5079208-5079244)
[»] chr3 (2 HSPs)
chr3 (119-158)||(21143746-21143785)
chr3 (122-158)||(46560742-46560778)
[»] chr2 (2 HSPs)
chr2 (119-158)||(29929990-29930029)
chr2 (124-157)||(42467844-42467877)
[»] chr5 (2 HSPs)
chr5 (123-157)||(28478134-28478168)
chr5 (115-163)||(21048160-21048208)
[»] chr8 (1 HSPs)
chr8 (115-155)||(17595139-17595179)


Alignment Details
Target: scaffold0024 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 9 - 255
Target Start/End: Complemental strand, 114739 - 114492
Alignment:
Q  9 atctttgtaccatgcattaagaaaatactacaagaaatgtt-atagatgaattttgacacaaagttgacaacgaatttcaacaacaattttgatacgttt 107  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  114739 atctttgtaccatgcattaagaaaatactacaagaaacgtttatagatgaattttgacacaaagttgacaacgaatttcaacaacaattttgatacgttc 114640  T
Q  108 ggtaaatgttgatgaatataacaaggtgtcacaactcattaaccatccactaaacataaatctttatccgcgattttaagcgtcatttgcaggactaaaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  114639 ggtaaatgttgatgaatataacaaggtgtcacaactcattaaccatccactaaacataactttttatccgcgattttaagcgtcatttgcaggactaaaa 114540  T
Q  208 tgagaagaaactatgataccaaaaagtaattacactttaccattattt 255  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  114539 tgagaagaaactacgataccaaaaagtaattacactttaccattattt 114492  T

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Target: scaffold0024; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 115 - 255
Target Start/End: Complemental strand, 121399 - 121263
Alignment:
Q  115 gttgatgaatataacaaggtgtcacaactcattaaccatccactaaacataaatctttatccgcgattttaagcgtcatttgcaggactaaaatgagaag 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||    |||| | ||||||||||||||||| |||||||||||||||||    
T  121399 gttgatgaatataacaaggtgtcacaactcattaaccatccactaaacgtaaat----atccacaattttaagcgtcatttgtaggactaaaatgagaag 121304  T
Q  215 aaactatgataccaaaaagtaattacactttaccattattt 255  Q
    ||||||  | ||||||| |||||||||||||||||||||||    
T  121303 aaactacaacaccaaaaggtaattacactttaccattattt 121263  T

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Target: scaffold0024; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 38 - 89
Target Start/End: Complemental strand, 121507 - 121456
Alignment:
Q  38 acaagaaatgttatagatgaattttgacacaaagttgacaacgaatttcaac 89  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  121507 acaagaaatgttatagatgaattttgacacaaagttgacaacaaatttcaac 121456  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 119 - 163
Target Start/End: Complemental strand, 10890450 - 10890406
Alignment:
Q  119 atgaatataacaaggtgtcacaactcattaaccatccactaaaca 163  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||    
T  10890450 atgaatataacaaggtgtcacgactcattaaccatccactgaaca 10890406  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 166
Target Start/End: Complemental strand, 29246460 - 29246413
Alignment:
Q  119 atgaatataacaaggtgtcacaactcattaaccatccactaaacataa 166  Q
    ||||||||||||||||||| ||||||||||||||| |||| |||||||    
T  29246460 atgaatataacaaggtgtcgcaactcattaaccatacactgaacataa 29246413  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 149
Target Start/End: Complemental strand, 7712346 - 7712316
Alignment:
Q  119 atgaatataacaaggtgtcacaactcattaa 149  Q
    |||||||||||||||||||||||||||||||    
T  7712346 atgaatataacaaggtgtcacaactcattaa 7712316  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 163
Target Start/End: Original strand, 32581076 - 32581120
Alignment:
Q  119 atgaatataacaaggtgtcacaactcattaaccatccactaaaca 163  Q
    |||||||||||||| |||| |||||||||||| ||||||||||||    
T  32581076 atgaatataacaagctgtcgcaactcattaacaatccactaaaca 32581120  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 121 - 166
Target Start/End: Original strand, 19808813 - 19808858
Alignment:
Q  121 gaatataacaaggtgtcacaactcattaaccatccactaaacataa 166  Q
    ||||||||||||||||||||||||| ||| |||||| | |||||||    
T  19808813 gaatataacaaggtgtcacaactcagtaatcatccattgaacataa 19808858  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 28820873 - 28820926
Alignment:
Q  101 tacgtttggtaaatg-ttgatgaatataacaaggtgtcacaactcattaaccat 153  Q
    ||||||||||||||| || |||||||||||||  | ||||||||||||||||||    
T  28820873 tacgtttggtaaatgattaatgaatataacaaaatatcacaactcattaaccat 28820926  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 158
Target Start/End: Original strand, 30066510 - 30066539
Alignment:
Q  129 caaggtgtcacaactcattaaccatccact 158  Q
    ||||||||||||||||||||||||||||||    
T  30066510 caaggtgtcacaactcattaaccatccact 30066539  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 151
Target Start/End: Complemental strand, 19809081 - 19809049
Alignment:
Q  119 atgaatataacaaggtgtcacaactcattaacc 151  Q
    |||||||||||||||||| ||||||||||||||    
T  19809081 atgaatataacaaggtgttacaactcattaacc 19809049  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 166
Target Start/End: Complemental strand, 6986739 - 6986692
Alignment:
Q  119 atgaatataacaaggtgtcacaactcattaaccatccactaaacataa 166  Q
    |||||||| |||||||||  |||||||||||||||||| |||||||||    
T  6986739 atgaatatgacaaggtgttgcaactcattaaccatccattaaacataa 6986692  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 158
Target Start/End: Complemental strand, 40829715 - 40829676
Alignment:
Q  119 atgaatataacaaggtgtcacaactcattaaccatccact 158  Q
    ||||||||||||||||||  ||||||||||||||||||||    
T  40829715 atgaatataacaaggtgtagcaactcattaaccatccact 40829676  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 158
Target Start/End: Complemental strand, 5079244 - 5079208
Alignment:
Q  122 aatataacaaggtgtcacaactcattaaccatccact 158  Q
    ||||||||||||| |||||||||||||||||| ||||    
T  5079244 aatataacaaggtatcacaactcattaaccattcact 5079208  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 158
Target Start/End: Original strand, 21143746 - 21143785
Alignment:
Q  119 atgaatataacaaggtgtcacaactcattaaccatccact 158  Q
    ||||||||||||| ||||||||||||||||| ||||||||    
T  21143746 atgaatataacaaagtgtcacaactcattaatcatccact 21143785  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 158
Target Start/End: Complemental strand, 46560778 - 46560742
Alignment:
Q  122 aatataacaaggtgtcacaactcattaaccatccact 158  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  46560778 aatataacaaggtgtcacaactcattaatcattcact 46560742  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 158
Target Start/End: Complemental strand, 29930029 - 29929990
Alignment:
Q  119 atgaatataacaaggtgtcacaactcattaaccatccact 158  Q
    |||||||||||||||||||| || ||||||||||||||||    
T  29930029 atgaatataacaaggtgtcaaaattcattaaccatccact 29929990  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 124 - 157
Target Start/End: Complemental strand, 42467877 - 42467844
Alignment:
Q  124 tataacaaggtgtcacaactcattaaccatccac 157  Q
    |||||||||||||||||||||||||||| |||||    
T  42467877 tataacaaggtgtcacaactcattaaccgtccac 42467844  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 157
Target Start/End: Original strand, 28478134 - 28478168
Alignment:
Q  123 atataacaaggtgtcacaactcattaaccatccac 157  Q
    ||||||||||||||||||| |||||||||||||||    
T  28478134 atataacaaggtgtcacaattcattaaccatccac 28478168  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 163
Target Start/End: Original strand, 21048160 - 21048208
Alignment:
Q  115 gttgatgaatataacaaggtgtcacaactcattaaccatccactaaaca 163  Q
    |||||||| ||||||| ||| |||| ||||||||| |||||||||||||    
T  21048160 gttgatgactataacatggtttcacgactcattaatcatccactaaaca 21048208  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 17595179 - 17595139
Alignment:
Q  115 gttgatgaatataacaaggtgtcacaactcattaaccatcc 155  Q
    |||| |||||||||||||||||| ||||||||||| |||||    
T  17595179 gttggtgaatataacaaggtgtctcaactcattaatcatcc 17595139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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