View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16020_low_10 (Length: 588)
Name: NF16020_low_10
Description: NF16020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16020_low_10 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 344; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 18 - 452
Target Start/End: Original strand, 41470392 - 41470820
Alignment:
| Q |
18 |
agggccgatgaaaaaatgatgtatttggccgaagagcataaggcacacatttcgttttccttttatctacagtatttagttcagttactgtatcaaactt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
41470392 |
agggccgatgaaaaaatgatgtatttggccgaagagcataaggcacacatttcgttttccttttatctacagtatttagttcagttaatgtatcaaactt |
41470491 |
T |
|
| Q |
118 |
aagttttgagaactcttttggttggatgatgcagaaagaaaaagagaaacttcacaagaaaattcatgacctggagagaggtcttggtgcaaaacaaaca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41470492 |
aagttttgagaactcttttggttggatgatgcagaaagaaaaagagaaacttcacaagaaaattcatgacctggagagaggtcttggtgcaaaacaaaca |
41470591 |
T |
|
| Q |
218 |
ttggaattggaaattgaacagctgaaaggagctctccaggtaatgagtcacattggagagactgatctagatgataagaaaaaattggaagcaatcagaa |
317 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||| || | |||||||||||| ||||||| || |
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|
| T |
41470592 |
ttggaattg------gaacggctgaaaggagctctccaggtaatgagtcacattcgagagactgatctagaagagatgaaaaaattggaggcaatcaaaa |
41470685 |
T |
|
| Q |
318 |
tggagctgcaggaaaaggaagaggaattggagggcgtggaagatcttcaacaaacactggttgttcaagagcgcaaaactaatgacgagttgcaagatgc |
417 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||| | ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41470686 |
tggagctgcataaaaagaaagaggaattggagggcgtgatacatcctcaacaagcactggttgttcaagagcgcaaaactaatgacgagttgcaagatgc |
41470785 |
T |
|
| Q |
418 |
ccgcaaaaaattaataagtgtatgtatctttctca |
452 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |
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|
| T |
41470786 |
ccgcaaaaaattgataagtgtatgtatctttctca |
41470820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 24 - 447
Target Start/End: Original strand, 40751535 - 40751958
Alignment:
| Q |
24 |
gatgaaaaaatgatgtatttggccgaagagcataaggcacacatttcgttttccttttatctacagtatttagttcagttac-tgtatcaaacttaagtt |
122 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||| |||||| ||||||| ||||| ||||| |||| ||||||| | ||||| | ||||| ||| |
|
|
| T |
40751535 |
gatgaaaaaatgatgtatttggcggaagaacataaggcacgcatttcattttcctattatcgacagtttttaattcagtttcatgtat-atacttaggtt |
40751633 |
T |
|
| Q |
123 |
ttgagaactcttttggttggatgatgcagaaagaaaaagagaaacttcacaagaaaattcatgacctggagagaggtcttggtgcaaaacaaacattgga |
222 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| || | |||||||||| ||||||| |
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|
| T |
40751634 |
ttgaggactcttttggttggatgttgcagaaagaaaaggagaaacttcacaagaaaattcatgacctggagagaggactggatgcaaaacaagcattgga |
40751733 |
T |
|
| Q |
223 |
attggaaattgaacagctgaaaggagctctccaggtaatgagtcacattggagagactgatctagatgataagaaaaaattggaagcaatcagaatggag |
322 |
Q |
| |
|
|||||| || |||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
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|
| T |
40751734 |
attggagatagaacagctgaaaggagctttccaggtaatgaatcacattggagagactgatccagatgagaagaaaaaattggaagcaatcagaatggag |
40751833 |
T |
|
| Q |
323 |
ctgcaggaaaaggaagaggaattggagggcgtggaagatcttcaacaaacactggttgttcaagagcgcaaaactaatgacgagttgcaagatgcccgca |
422 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||| |
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|
| T |
40751834 |
ctgcaggaaaaggaagaggaattggagaacgtggaagatcttcaacaaacactggttgttcaggaacgcaaaactaatgacgaattgcaagatgcccgca |
40751933 |
T |
|
| Q |
423 |
aaaaattaataagtgtatgtatctt |
447 |
Q |
| |
|
|||| |||||||||||||||||||| |
|
|
| T |
40751934 |
aaaagttaataagtgtatgtatctt |
40751958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 24 - 452
Target Start/End: Original strand, 41477280 - 41477708
Alignment:
| Q |
24 |
gatgaaaaaatgatgtatttggccgaagagcataaggcacacatttcgttttccttttatctacagtatttagttcagttac-tgtatcaaacttaagtt |
122 |
Q |
| |
|
|||||||||||||||| |||||| ||||| ||||||||| ||||| |||||||||||||||||| |||| |||||| || | ||| | |||| |||| |
|
|
| T |
41477280 |
gatgaaaaaatgatgtctttggctgaagaacataaggcaagtatttcactttccttttatctacagtttttaattcagtaacatttat-atacttcagtt |
41477378 |
T |
|
| Q |
123 |
ttgagaactcttttggttggatgatgcagaaagaaaaagagaaacttcacaagaaaattcatgacctggagagaggtcttggtgcaaaacaaacattgga |
222 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||| |
|
|
| T |
41477379 |
ttgaggactcttttggttggatgttgcagaaagaaaaggagaaacttcacaagaaaattcatgacctggagagaggacttgatgcaaaacaagcattgga |
41477478 |
T |
|
| Q |
223 |
attggaaattgaacagctgaaaggagctctccaggtaatgagtcacattggagagactgatctagatgataagaaaaaattggaagcaatcagaatggag |
322 |
Q |
| |
|
||||| || |||| ||||||||||||| |||||||||||| |||||||||||||||||||||||| || ||||||||| |||| | ||||| ||||||| |
|
|
| T |
41477479 |
gttggagatagaacggctgaaaggagctttccaggtaatgaatcacattggagagactgatctagaagagaagaaaaaactggaggaaatcaaaatggag |
41477578 |
T |
|
| Q |
323 |
ctgcaggaaaaggaagaggaattggagggcgtggaagatcttcaacaaacactggttgttcaagagcgcaaaactaatgacgagttgcaagatgcccgca |
422 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41477579 |
ctgcaggaaaaagaagaggaattggaaggcgtggaagatcttcaacaaacactggttgttcaagagcgcaaaactaatgacgagttgcaagatgcccgca |
41477678 |
T |
|
| Q |
423 |
aaaaattaataagtgtatgtatctttctca |
452 |
Q |
| |
|
||||||| |||||||||||||||||||||| |
|
|
| T |
41477679 |
aaaaattgataagtgtatgtatctttctca |
41477708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 24 - 452
Target Start/End: Original strand, 41484286 - 41484714
Alignment:
| Q |
24 |
gatgaaaaaatgatgtatttggccgaagagcataaggcacacatttcgttttccttttatctacagtatttagttcagttac-tgtatcaaacttaagtt |
122 |
Q |
| |
|
||||||||||||||||| ||||| ||||| |||||||||||| |||| ||||||| ||| ||||||| |||| ||||||| | ||||| | ||||||||| |
|
|
| T |
41484286 |
gatgaaaaaatgatgtacttggcagaagaacataaggcacacttttcattttcctattacctacagtttttaattcagttgcatgtat-atacttaagtt |
41484384 |
T |
|
| Q |
123 |
ttgagaactcttttggttggatgatgcagaaagaaaaagagaaacttcacaagaaaattcatgacctggagagaggtcttggtgcaaaacaaacattgga |
222 |
Q |
| |
|
|| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||| ||||||| |
|
|
| T |
41484385 |
ttaaggactcttttggttggatgttgcagaaagaaaaagagaaacttcacaagaaaattcatgacctggagagaggacttgatgctaaacaggcattgga |
41484484 |
T |
|
| Q |
223 |
attggaaattgaacagctgaaaggagctctccaggtaatgagtcacattggagagactgatctagatgataagaaaaaattggaagcaatcagaatggag |
322 |
Q |
| |
|
|||||| || |||| ||| ||||||||| |||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
41484485 |
attggagatagaacggctaaaaggagctttccaggtaatgaatcacattggagagactgatatagatgagaagaaaaaattggaagcaatcagaatggag |
41484584 |
T |
|
| Q |
323 |
ctgcaggaaaaggaagaggaattggagggcgtggaagatcttcaacaaacactggttgttcaagagcgcaaaactaatgacgagttgcaagatgcccgca |
422 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||||||||||||||| || ||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
41484585 |
ctgcaggaaaaggaagaggaattagagggtgtggaagatcttcaacaaacactagtagttcaggagcgcaaaactaatgacgaattgcaagatgcccgca |
41484684 |
T |
|
| Q |
423 |
aaaaattaataagtgtatgtatctttctca |
452 |
Q |
| |
|
|||| |||||| |||||||||||| |||| |
|
|
| T |
41484685 |
aaaagttaatagctgtatgtatcttcctca |
41484714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 20 - 452
Target Start/End: Complemental strand, 16408435 - 16408003
Alignment:
| Q |
20 |
ggccgatgaaaaaatgatgtatttggccgaagagcataaggcacacatttcgttttccttttatctacagtatttagttcagttac-tgtatcaaactta |
118 |
Q |
| |
|
||||||||||||||||||| ||| || ||||| ||||||||||| ||||| |||| ||||||||| ||| |||| ||||||||| ||| || | || | |
|
|
| T |
16408435 |
ggccgatgaaaaaatgatgcgtttagctgaagaccataaggcacagatttcatttttcttttatctcgagtttttaattcagttacatgtgtcca-ctca |
16408337 |
T |
|
| Q |
119 |
agttttgagaactcttttggttggatgatgcagaaagaaaaagagaaacttcacaagaaaattcatgacctggagagaggtcttggtgcaaaacaaacat |
218 |
Q |
| |
|
||||||||| ||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||| |
|
|
| T |
16408336 |
agttttgaggactattttggttgtatgttgcagaaagaaaaagagaaacttcacaagaaaattcatgacctggagagaggacttgatgcaaaacaagcat |
16408237 |
T |
|
| Q |
219 |
tggaattggaaattgaacagctgaaaggagctctccaggtaatgagtcacattggagagactgatctagatgataagaaaaaattggaagcaatcagaat |
318 |
Q |
| |
|
|||| |||||| |||||| ||| | ||||||| |||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
16408236 |
tggagttggaagttgaacggctaagaggagctttccaggtaatgaatcacattggagagactgatcgaaatgataagaaaaaattggaagcaatcagaat |
16408137 |
T |
|
| Q |
319 |
ggagctgcaggaaaaggaagaggaattggagggcgtggaagatcttcaacaaacactggttgttcaagagcgcaaaactaatgacgagttgcaagatgcc |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16408136 |
ggagctgcaggaaaaggaagaggaattggagggtgtggaagatcttcaacaaacacttgttgttcaagagcgcaaaactaatgacgagttgcaagatgct |
16408037 |
T |
|
| Q |
419 |
cgcaaaaaattaataagtgtatgtatctttctca |
452 |
Q |
| |
|
||||||||||||||||||||||||| || ||||| |
|
|
| T |
16408036 |
cgcaaaaaattaataagtgtatgtacctatctca |
16408003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 129 - 260
Target Start/End: Original strand, 52481059 - 52481190
Alignment:
| Q |
129 |
actcttttggttggatgatgcagaaagaaaaagagaaacttcacaagaaaattcatgacctggagagaggtcttggtgcaaaacaaacattggaattgga |
228 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||| |||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
52481059 |
actcttttggttggatgttgcagaaagaaaaggagaaacttcacaagaaaatccatgacctacagagaggtcttgatgcaaaacaagcattggaattgga |
52481158 |
T |
|
| Q |
229 |
aattgaacagctgaaaggagctctccaggtaa |
260 |
Q |
| |
|
|||||||||| ||| || |||| || |||||| |
|
|
| T |
52481159 |
aattgaacagttgagagaagctttcgaggtaa |
52481190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 293 - 452
Target Start/End: Original strand, 52481190 - 52481349
Alignment:
| Q |
293 |
aagaaaaaattggaagcaatcagaatggagctgcaggaaaaggaagaggaattggagggcgtggaagatcttcaacaaacactggttgttcaagagcgca |
392 |
Q |
| |
|
||||||||| |||| |||||| |||||||||||||||||| ||||||| | | | | |||| |||||||||| |||||| ||||| || ||||||| |
|
|
| T |
52481190 |
aagaaaaaactggaggcaatcgaaatggagctgcaggaaaaagaagagggccttcaagacatggatgatcttcaacgaacacttgttgtccaggagcgca |
52481289 |
T |
|
| Q |
393 |
aaactaatgacgagttgcaagatgcccgcaaaaaattaataagtgtatgtatctttctca |
452 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||| |
|
|
| T |
52481290 |
aaactaatgacgagttgcaagatgcccgaaaaaagttaataagtgtatgtatttttctca |
52481349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 504 - 568
Target Start/End: Complemental strand, 16407951 - 16407886
Alignment:
| Q |
504 |
caagtaattctcatcccttgttcagtggttt-gttgtccaaagaacaccaatcaagtcataattgc |
568 |
Q |
| |
|
||||||||| || |||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
16407951 |
caagtaattatcttcccttgttcagtggtttcgttgtccaaagaacactaatcaagtcataattgc |
16407886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 52472306 - 52472391
Alignment:
| Q |
20 |
ggccgatgaaaaaatgatgtatttggccgaagagcataaggcacacatttcgttttccttttatctacagtatttagttcagttac |
105 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||| |||||||||| ||||| ||||||||| || |||| |||||| ||||||||| |
|
|
| T |
52472306 |
ggccgatgaaaaaatgatgcatttggctgaagaacataaggcacgcatttgattttcctttcatgtacaatatttaattcagttac |
52472391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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