View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16020_low_112 (Length: 247)
Name: NF16020_low_112
Description: NF16020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16020_low_112 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 4 - 230
Target Start/End: Original strand, 3821961 - 3822187
Alignment:
| Q |
4 |
agcttggtcacatgtgttatgattcatattcctcctctctctctttcgtgaaaacatattcctattctctgaatcatttgatcaagaacctcaacataaa |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
3821961 |
agcttggtcacatgtgttatgattcatattcctcctctctctctttcgtgaaaacatattcctattctctgaatcatttggtcaagaacctcaacataaa |
3822060 |
T |
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| Q |
104 |
gttataaagttatgtgccattgtcacaaacgaacaaaaatatttctattgcattaccccgcaaagcaaaataaatacgtgaccaatatagcttggtgatt |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3822061 |
gttataaagttatgtgccattgtcacaaacgaacaaaaatatttctattgcattaccccgcaaagcaaaataaatacgtgaccaatatagcttggtgatt |
3822160 |
T |
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| Q |
204 |
ccatgaactaaccaataagctacctac |
230 |
Q |
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||||||||||||||||||||||||||| |
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| T |
3822161 |
ccatgaactaaccaataagctacctac |
3822187 |
T |
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