View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16020_low_119 (Length: 238)
Name: NF16020_low_119
Description: NF16020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16020_low_119 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 3 - 217
Target Start/End: Complemental strand, 7876208 - 7875994
Alignment:
| Q |
3 |
gacaaacggggttggtaaaacaacaatcgccaaagccacttgaaatcaaatgagttacaattttgaaggtcagagcttccttctaaatgttaatgaaatt |
102 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7876208 |
gacaaatggggttggtaaaacaacaatcgccaaagccacttgaaatcaaatgagttacaattttgaaggtcagagcttccttctaaatgttaatgaaatt |
7876109 |
T |
|
| Q |
103 |
tgggaatgtagtgatggccaagtttctttacagcggcagcttctttcagatatctacaaaatgacaaagatacagataaatacagttgaatcaggaaaaa |
202 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7876108 |
tgggagtgtagtgatggccaagtttctttacagcggcagcttctttcagatatctacaaaatgacaaagatacagataaatacagttgaatcaggaaaaa |
7876009 |
T |
|
| Q |
203 |
tggtattatggaaaa |
217 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
7876008 |
tggtattatggaaaa |
7875994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 124 - 200
Target Start/End: Complemental strand, 7890856 - 7890780
Alignment:
| Q |
124 |
gtttctttacagcggcagcttctttcagatatctacaaaatgacaaagatacagataaatacagttgaatcaggaaa |
200 |
Q |
| |
|
|||||||| ||||| || ||||||| ||| |||| ||||| ||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
7890856 |
gtttctttccagcgacaacttcttttagacatctgcaaaacaacaaagatacatatagatacagttgaatcaggaaa |
7890780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 68
Target Start/End: Complemental strand, 7890973 - 7890915
Alignment:
| Q |
10 |
ggggttggtaaaacaacaatcgccaaagccacttgaaatcaaatgagttacaattttga |
68 |
Q |
| |
|
|||||||||||||||| ||| || |||||||||| ||||||||||||| || |||||| |
|
|
| T |
7890973 |
ggggttggtaaaacaataattgctaaagccacttataatcaaatgagtttcacttttga |
7890915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 145 - 209
Target Start/End: Complemental strand, 34735491 - 34735427
Alignment:
| Q |
145 |
ctttcagatatctacaaaatgacaaagatacagataaatacagttgaatcaggaaaaatggtatt |
209 |
Q |
| |
|
||||| ||||||||||||| ||||| ||| ||||| ||||||||||||||||||||||| |||| |
|
|
| T |
34735491 |
ctttctgatatctacaaaacaacaaaaataaagatagatacagttgaatcaggaaaaatgatatt |
34735427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 209
Target Start/End: Complemental strand, 34727734 - 34727670
Alignment:
| Q |
145 |
ctttcagatatctacaaaatgacaaagatacagataaatacagttgaatcaggaaaaatggtatt |
209 |
Q |
| |
|
||||| ||||||||||||| ||||| ||| ||||| | ||||||||||||||||||||| |||| |
|
|
| T |
34727734 |
ctttctgatatctacaaaacaacaaaaataaagatagaaacagttgaatcaggaaaaatgatatt |
34727670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 209
Target Start/End: Complemental strand, 34730892 - 34730828
Alignment:
| Q |
145 |
ctttcagatatctacaaaatgacaaagatacagataaatacagttgaatcaggaaaaatggtatt |
209 |
Q |
| |
|
||||| ||||||||||||| ||||| ||| ||||| | ||||||||||||||||||||| |||| |
|
|
| T |
34730892 |
ctttctgatatctacaaaacaacaaaaataaagatagaaacagttgaatcaggaaaaatgatatt |
34730828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University