View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16020_low_12 (Length: 573)

Name: NF16020_low_12
Description: NF16020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16020_low_12
NF16020_low_12
[»] chr2 (15 HSPs)
chr2 (69-550)||(9079786-9080271)
chr2 (267-436)||(10474103-10474274)
chr2 (267-437)||(10545090-10545258)
chr2 (218-409)||(10518493-10518679)
chr2 (218-422)||(10507306-10507505)
chr2 (269-410)||(10848757-10848897)
chr2 (267-389)||(10463575-10463695)
chr2 (267-438)||(7476521-7476688)
chr2 (271-410)||(28105303-28105442)
chr2 (267-438)||(10492711-10492876)
chr2 (300-410)||(10860661-10860774)
chr2 (271-410)||(27967281-27967420)
chr2 (267-411)||(7478686-7478826)
chr2 (267-319)||(10507523-10507573)
chr2 (267-307)||(10488770-10488810)
[»] chr5 (2 HSPs)
chr5 (218-365)||(33602569-33602711)
chr5 (267-428)||(33575337-33575495)


Alignment Details
Target: chr2 (Bit Score: 440; Significance: 0; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 69 - 550
Target Start/End: Original strand, 9079786 - 9080271
Alignment:
Q  69 taatattgaccagtattacccctcaggttttgagatgaagttggagaacaaattcaaatatgttttattcttgttttacattttagggtttgatccttga 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9079786 taatattgaccagtattacccctcaggttttgagatgaagttggagaacaaattcaaatatgttttattcttgttttacattttagggtttgatccttga 9079885  T
Q  169 ggaaatccattttttgtccatgcacctatgaaggcagatgcattttctgatatgaaaactagttgttacttctccctcacccaccccctctccaaaacct 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9079886 ggaaatccattttttgtccatgcacctatgaaggcagatgcattttctgatatgaaaactagttgttacttctccctcacccaccccctctccaaaacct 9079985  T
Q  269 tattttgtaaatagttttctttttgttattattttgtgtgtgtaggaagcagttcgtagggccaccatagcggagaagtttataccagtattcatggtaa 368  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  9079986 tattttgtaaatagttttctttttgttattattttgtgtgtgtaggaagcagttcgtagggccaccatagcggagaagtttataccagtattcatgggaa 9080085  T
Q  369 gtgcttacaaatataaggtaattgttgaattaccttg----aattctttgttttatggacttgatcttcattcctnnnnnnntctccaaaccttgaataa 464  Q
    |||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||       ||||||||||||||||||    
T  9080086 gtgcttacaaatataaggtaattgttgaattaccttgaattaattctttgttttatggacttgatcttcattcctccccccctctccaaaccttgaataa 9080185  T
Q  465 agactgagggagttgcattatgttctctttttcaaaaacttatcttgtagcattcttagtatgatggtggctacaatggtccatga 550  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9080186 agactgagggagttgcattatgttttctttttcaaaaacttatcttgtagcattcttagtatgatggtggctacaatggtccatga 9080271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 267 - 436
Target Start/End: Complemental strand, 10474274 - 10474103
Alignment:
Q  267 cttattttgtaaatagttttctttttgttattattttgtgtgtgt--aggaagcagttcgtagggccaccatagcggagaagtttataccagtattcatg 364  Q
    ||||| ||||||| ||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||   ||||||||||||| ||||||||    
T  10474274 cttatcttgtaaacagttttctttttgttattattgtgtgtgtgtgtaggaagcagttcgtagggccaccatagcacggaagtttataccaatattcatg 10474175  T
Q  365 gtaagtgcttacaaatataaggtaattgttgaattaccttgaattctttgttttatggacttgatcttcatt 436  Q
    |  ||||||| ||| |||||||||| |||| ||||| ||||||||||||||| ||||| ||||| |||||||    
T  10474174 ggcagtgctttcaagtataaggtaagtgttaaattaacttgaattctttgttgtatggtcttgaccttcatt 10474103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 267 - 437
Target Start/End: Complemental strand, 10545258 - 10545090
Alignment:
Q  267 cttattttgtaaatagttttctttttgttattattttgtgtgtgtaggaagcagttcgtagggccaccatagcggagaagtttataccagtattcatggt 366  Q
    ||||| |||||||||||||| ||||||||||||||  |||| |||||||||| |||||  |||||||||||||   ||| ||||||||| | |||||||     
T  10545258 cttatcttgtaaatagttttatttttgttattatt--gtgtttgtaggaagctgttcgccgggccaccatagcacggaaatttataccatttttcatggg 10545161  T
Q  367 aagtgcttacaaatataaggtaattgttgaattaccttgaattctttgttttatggacttgatcttcattc 437  Q
     ||||||| || ||||||||||| |||| ||||||||||||||||||||| ||||| ||||| ||||||||    
T  10545160 cagtgctttcagatataaggtaactgttaaattaccttgaattctttgttgtatggtcttgaccttcattc 10545090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 218 - 409
Target Start/End: Complemental strand, 10518679 - 10518493
Alignment:
Q  218 atatgaaaactagttgttacttctccctcacccaccccctctccaaaaccttattttgtaaatagttttctttttgttattattttgtgtgtgtaggaag 317  Q
    |||||||||| |||||||||||| ||| |||||  ||| | | |||| | |||||||||||||  |||||||||||||||||||  ||||||||||||||    
T  10518679 atatgaaaaccagttgttacttcgcccccaccc--cccattttcaaatc-ttattttgtaaattattttctttttgttattatt--gtgtgtgtaggaag 10518585  T
Q  318 cagttcgtagggccaccatagcggagaagtttataccagtattcatggtaagtgcttacaaatataaggtaattgttgaattaccttgaatt 409  Q
    |||||||| |||||||||||||   ||| ||||||||| |  ||||||  ||||| | ||||||||||||||  |||||||| |||||||||    
T  10518584 cagttcgtcgggccaccatagcacggaaatttataccatttctcatgggcagtgcattcaaatataaggtaaccgttgaattgccttgaatt 10518493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 218 - 422
Target Start/End: Complemental strand, 10507505 - 10507306
Alignment:
Q  218 atatgaaaactagttgttacttctccctcacccaccccctctccaaaaccttattttgtaaatagttttctttttgttattattttgtgtgtgtaggaag 317  Q
    |||| ||||| |||||||||||||||| |||||  ||| | | |||| | ||| ||||||| |  ||||||| |||||||||||  ||||||||||||||    
T  10507505 atataaaaaccagttgttacttctcccccaccc--cccattttcaaatc-ttaatttgtaagttattttcttgttgttattatt--gtgtgtgtaggaag 10507411  T
Q  318 cagttcgtagggccaccatagcggagaagtttataccagtattcatggtaagtgcttacaaatataaggtaattgttgaattaccttgaattctttgttt 417  Q
    |||||||| || ||||||||||   ||| |||||||| ||||||||||  ||||||| |||||| ||||||   |||||||| ||||||||||| ||||     
T  10507410 cagttcgtcggaccaccatagcacggaaatttatacccgtattcatgggcagtgctttcaaatacaaggtacccgttgaattgccttgaattctctgttg 10507311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 269 - 410
Target Start/End: Complemental strand, 10848897 - 10848757
Alignment:
Q  269 tattttgtaaatagttttctttttgttattattttgtgtgtgtaggaagcagttcgtagggccaccatagcggagaagtttataccagtattcatggtaa 368  Q
    ||||||| ||||| |||||||||||||||||||    ||||||||||||||||||||||||||||||||||  | || |||||||||||||||||||       
T  10848897 tattttgaaaataattttctttttgttattatt----gtgtgtaggaagcagttcgtagggccaccatagcacacaaatttataccagtattcatgggtg 10848802  T
Q  369 gtgcttacaaat---ataaggtaattgttgaattaccttgaattc 410  Q
     ||||| |||||   |||||||||  ||||||| |||||||||||    
T  10848801 atgctttcaaatataataaggtaaacgttgaatcaccttgaattc 10848757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 267 - 389
Target Start/End: Complemental strand, 10463695 - 10463575
Alignment:
Q  267 cttattttgtaaatagttttctttttgttattattttgtgtgtgtaggaagcagttcgtagggccaccatagcggagaagtttataccagtattcatggt 366  Q
    ||||||||||||||| |||||||||||||||||||  |||| ||||||||||| ||||||| ||||| |||||   ||| ||||||||| | |||||||     
T  10463695 cttattttgtaaataattttctttttgttattatt--gtgtttgtaggaagcaattcgtagagccacgatagcacggaaatttataccatttttcatggg 10463598  T
Q  367 aagtgcttacaaatataaggtaa 389  Q
     ||||||| ||||||||||||||    
T  10463597 tagtgctttcaaatataaggtaa 10463575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 267 - 438
Target Start/End: Original strand, 7476521 - 7476688
Alignment:
Q  267 cttattttgtaaatagttttctttttgttattattttgtgtgtgtaggaagcagttcgtagggccaccatagcggagaagtttataccagtattcatggt 366  Q
    |||||||||| | ||||||||||||||||||||||    |||||||||||||| ||| |||||| || |||||  |||| ||| |||| || |||||||     
T  7476521 cttattttgtcactagttttctttttgttattatt----gtgtgtaggaagcaattcatagggcaactatagcacagaaatttgtaccggttttcatggg 7476616  T
Q  367 aagtgcttacaaatataaggtaattgttgaattaccttgaattctttgttttatggacttgatcttcattcc 438  Q
     ||||| | ||| ||||||||||  |||||||| |||||||||||||||| ||||  ||||| | |||||||    
T  7476617 tagtgcattcaagtataaggtaaccgttgaatttccttgaattctttgttatatgttcttgaccatcattcc 7476688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 271 - 410
Target Start/End: Original strand, 28105303 - 28105442
Alignment:
Q  271 ttttgtaaatagttttctttttgttattattttgtgtgtgtaggaagcagttcgtagggccaccatagcggagaagtttataccagtattcatggtaagt 370  Q
    |||| ||||||||||| || ||| |||||||||||||||  || | |||||||||||||||||||||||   |||||||||||||||||||||||  | |    
T  28105303 ttttttaaatagtttt-ttattgctattattttgtgtgt--agaacgcagttcgtagggccaccatagcacggaagtttataccagtattcatgggtaat 28105399  T
Q  371 gcttacaaat---ataaggtaattgttgaattaccttgaattc 410  Q
    |||| | |||   |||||||||| |||||||||||||||||||    
T  28105400 gctttccaatataataaggtaatagttgaattaccttgaattc 28105442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 267 - 438
Target Start/End: Complemental strand, 10492876 - 10492711
Alignment:
Q  267 cttattttgtaaatagttttctttttgttattattttgtgtgtgtaggaagcagttcgtagggccaccatagcggagaagtttataccagtattcatggt 366  Q
    ||||||| |||| ||||||||||||||||||| ||      |||||||||||| |||||||||| ||||||||  | || ||| |||| || |||||||     
T  10492876 cttatttggtaactagttttctttttgttattgtt------gtgtaggaagcaattcgtagggcaaccatagcacataaatttgtaccggttttcatggg 10492783  T
Q  367 aagtgcttacaaatataaggtaattgttgaattaccttgaattctttgttttatggacttgatcttcattcc 438  Q
     ||||| | ||| ||||||||||  |||||||| |||||||||||||||| ||||  ||||| | |||||||    
T  10492782 tagtgcattcaagtataaggtaaccgttgaattgccttgaattctttgttatatgttcttgaccatcattcc 10492711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 300 - 410
Target Start/End: Complemental strand, 10860774 - 10860661
Alignment:
Q  300 ttttgtgtgtgtaggaagcagttcgtagggccaccatagcggagaagtttataccagtattcatggtaag---tgcttacaaatataaggtaattgttga 396  Q
    |||||| ||||||||||||||||||||||| |||||||||   ||| |||||||||||||||||||   |   ||||| ||||||||||||||   ||||    
T  10860774 ttttgtctgtgtaggaagcagttcgtagggtcaccatagcacggaaatttataccagtattcatgggtggctatgctttcaaatataaggtaaccattga 10860675  T
Q  397 attaccttgaattc 410  Q
    ||||||||||||||    
T  10860674 attaccttgaattc 10860661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 271 - 410
Target Start/End: Complemental strand, 27967420 - 27967281
Alignment:
Q  271 ttttgtaaatagttttctttttgttattattttgtgtgtgtaggaagcagttcgtagggccaccatagcggagaagtttataccagtattcatggtaagt 370  Q
    |||| ||||||||||| || ||| |||||||||||||||  || | |||||||||||||||||||||||  | ||||||||||||| ||||||||  | |    
T  27967420 ttttttaaatagtttt-ttattgctattattttgtgtgt--agaacgcagttcgtagggccaccatagcacacaagtttataccagcattcatgggtaat 27967324  T
Q  371 gcttacaaat---ataaggtaattgttgaattaccttgaattc 410  Q
     ||| | |||   |||||||||| |||||||||||||||||||    
T  27967323 tctttccaatataataaggtaatagttgaattaccttgaattc 27967281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 267 - 411
Target Start/End: Original strand, 7478686 - 7478826
Alignment:
Q  267 cttattttgtaaatagttttctttttgttattattttgtgtgtgtaggaagcagttcgtagggccaccatagcggagaagtttataccagtattcatggt 366  Q
    |||||||||||| |||||||||||||||||||||    ||||||||||||||||||| |||||| |||| |||    || |||||||| || |||||||     
T  7478686 cttattttgtaactagttttctttttgttattat----tgtgtgtaggaagcagttcttagggcaaccagagcacgcaaatttataccggtcttcatggg 7478781  T
Q  367 aagtgcttacaaatataaggtaattgttgaattaccttgaattct 411  Q
     ||||||| | || |||||||||  |||||  | |||||||||||    
T  7478782 cagtgcttccgaaaataaggtaaccgttgatctgccttgaattct 7478826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 319
Target Start/End: Complemental strand, 10507573 - 10507523
Alignment:
Q  267 cttattttgtaaatagttttctttttgttattattttgtgtgtgtaggaagca 319  Q
    ||||||||||| |||| ||||||||||||||||  |||| |||||||||||||    
T  10507573 cttattttgtatataggtttctttttgttatta--ttgtatgtgtaggaagca 10507523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 267 - 307
Target Start/End: Complemental strand, 10488810 - 10488770
Alignment:
Q  267 cttattttgtaaatagttttctttttgttattattttgtgt 307  Q
    |||||||||||| ||||||||||| |||||||||| |||||    
T  10488810 cttattttgtaactagttttctttctgttattattgtgtgt 10488770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 7e-29; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 218 - 365
Target Start/End: Complemental strand, 33602711 - 33602569
Alignment:
Q  218 atatgaaaactagttgttacttctccctcacccaccccctctccaaaaccttattttgtaaatagttttctttttgttattattttgtgtgtgtaggaag 317  Q
    |||||||||| |||||||||||| ||| ||||| ||   ||| |||| | |||| |||||||||||||||||||||||||||||  ||||||||||||||    
T  33602711 atatgaaaaccagttgttacttcgcccccacccgcca--tctacaaatc-ttatcttgtaaatagttttctttttgttattatt--gtgtgtgtaggaag 33602617  T
Q  318 cagttcgtagggccaccatagcggagaagtttataccagtattcatgg 365  Q
    ||||| ||||||||||||||||   ||||||||||||| |||||||||    
T  33602616 cagtttgtagggccaccatagcacggaagtttataccattattcatgg 33602569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 267 - 428
Target Start/End: Original strand, 33575337 - 33575495
Alignment:
Q  267 cttattttgtaaatagttttctttttgttattattttgtgtgtgtaggaagcagttcgtagggccaccatagcggagaagtttataccagtattcatggt 366  Q
    ||||| ||||||||||||||||||| |||||||||  |||||||||||||||||||| |||||||| ||| ||   || |||||||||| |||||||||     
T  33575337 cttatcttgtaaatagttttctttt-gttattatt--gtgtgtgtaggaagcagttcatagggccatcattgcacggaggtttataccattattcatggg 33575433  T
Q  367 aagtgcttacaaatataaggtaattgttgaattaccttgaattctttgttttatggacttga 428  Q
     ||||||  ||||||||||||||  ||| ||||| |||||||||  |||||||||| |||||    
T  33575434 cagtgctctcaaatataaggtaagcgttaaattaacttgaattccatgttttatggtcttga 33575495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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