View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16020_low_123 (Length: 235)
Name: NF16020_low_123
Description: NF16020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16020_low_123 |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 365040 - 365263
Alignment:
| Q |
1 |
aaagctcagacttaaccttgaatggcgtccgagcttgcccaaatattcacacataagttgcttttctaattacatgttggaaatattaagaatttgctca |
100 |
Q |
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| T |
365040 |
aaagctcagacttaatcttgaatggcatccgagcttgcccaaatattcacacataagttgtttttctaattacatgttggaaatattaagaatttgctca |
365139 |
T |
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| Q |
101 |
tttaaattaaaaatctccaccaacaaatgtgagtgctgcatatggcaacaaagatgaatggattctaaaaaacctatctcacaaataacattttgaatag |
200 |
Q |
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| T |
365140 |
tttaaattaaaaatcttcaccaacaaatgtgagtgctgcatatggcaacgaagatgaatggattctaaaaaacctatctcacaaataacattttgaatag |
365239 |
T |
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| Q |
201 |
aattgttgattaccaacattcact |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
365240 |
aattgttgattaccaacattcact |
365263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 219
Target Start/End: Original strand, 24183513 - 24183556
Alignment:
| Q |
176 |
atctcacaaataacattttgaatagaattgttgattaccaacat |
219 |
Q |
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| T |
24183513 |
atctcacaaataacctgttgaatagagttgttgattaccaacat |
24183556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 217
Target Start/End: Complemental strand, 243918 - 243878
Alignment:
| Q |
177 |
tctcacaaataacattttgaatagaattgttgattaccaac |
217 |
Q |
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| T |
243918 |
tctcgcaaataactttttgaatagagttgttgattaccaac |
243878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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