View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16020_low_132 (Length: 218)
Name: NF16020_low_132
Description: NF16020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16020_low_132 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 40841782 - 40841915
Alignment:
| Q |
1 |
tccaagatgataaatattcttcgaacaaagaggtttactattagaacacaaggggttggtatgaatgtgagggagtggcgtgatttctagtgtttgttca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40841782 |
tccaagatgataaatattcttcgaacaaagaggtttactattagaacacaaggggttggtatgaatgtgagggagtggcgtgatttctagtgtttgttca |
40841881 |
T |
|
| Q |
101 |
cggcagaaaataactttcgtgaacatcgaaaata |
134 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |
|
|
| T |
40841882 |
cggcagaaaataactttcgtgaacatagaaaata |
40841915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 41958700 - 41958833
Alignment:
| Q |
1 |
tccaagatgataaatattcttcgaacaaagaggtttactattagaacacaaggggttggtatgaatgtgagggagtggcgtgatttctagtgtttgttca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41958700 |
tccaagatgataaatattcttcgaacaaagaggtttactattagaacacaaggggttggtatgaatgtgagggagtggcgtgatttctagtgtttgttca |
41958799 |
T |
|
| Q |
101 |
cggcagaaaataactttcgtgaacatcgaaaata |
134 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||| |
|
|
| T |
41958800 |
cggcagaaaataattttcgtgaacatagaaaata |
41958833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 128 - 208
Target Start/End: Original strand, 41958878 - 41958958
Alignment:
| Q |
128 |
gaaaataggggtcgaggggaaaagagggtggaattaaggagatgttggtcataactataatgagacaagtaattgaatact |
208 |
Q |
| |
|
|||||||||||||||||| |||||||| | |||||||||||||||| |||||| |||||||||||| ||||||||||||| |
|
|
| T |
41958878 |
gaaaataggggtcgagggaaaaagaggaggaaattaaggagatgttgatcataattataatgagacaggtaattgaatact |
41958958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 179 - 218
Target Start/End: Original strand, 40842107 - 40842146
Alignment:
| Q |
179 |
taactataatgagacaagtaattgaatactataaatctat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40842107 |
taactataatgagacaagtaattgaatactataaatctat |
40842146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 174
Target Start/End: Original strand, 40841960 - 40842006
Alignment:
| Q |
128 |
gaaaataggggtcgaggggaaaagagggtggaattaaggagatgttg |
174 |
Q |
| |
|
|||||||||||||||||| |||||||| | |||||||||||||||| |
|
|
| T |
40841960 |
gaaaataggggtcgagggaaaaagaggaggaaattaaggagatgttg |
40842006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 110; Significance: 1e-55; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 29587446 - 29587313
Alignment:
| Q |
1 |
tccaagatgataaatattcttcgaacaaagaggtttactattagaacacaaggggttggtatgaatgtgagggagtggcgtgatttctagtgtttgttca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||| ||| ||| |
|
|
| T |
29587446 |
tccaagatgataaatattcttcgaacaaagaggtttactattacaacataaggggttggtatgaatgtgagggagtggcatgatttctagtggttgctca |
29587347 |
T |
|
| Q |
101 |
cggcagaaaataactttcgtgaacatcgaaaata |
134 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |
|
|
| T |
29587346 |
cggcagaaaataactttcgtgaacatagaaaata |
29587313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 9993163 - 9993078
Alignment:
| Q |
1 |
tccaagatgataaatattcttcgaacaaagaggtttactattagaacacaaggggttggtatgaatgtgagggagtggcgtgattt |
86 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
9993163 |
tccaagatgataaatattcttcgaacaaagaggtttactatcagaacacaaggggttgttatgaatgtgagggagtggcgtgattt |
9993078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 128 - 208
Target Start/End: Complemental strand, 9993046 - 9992966
Alignment:
| Q |
128 |
gaaaataggggtcgaggggaaaagagggtggaattaaggagatgttggtcataactataatgagacaagtaattgaatact |
208 |
Q |
| |
|
|||||||||||||||||| |||||||| | |||||||||||||||| | |||| |||||||||||||||||||||||||| |
|
|
| T |
9993046 |
gaaaataggggtcgagggaaaaagaggaggaaattaaggagatgttgattataattataatgagacaagtaattgaatact |
9992966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 128 - 206
Target Start/End: Complemental strand, 29587268 - 29587190
Alignment:
| Q |
128 |
gaaaataggggtcgaggggaaaagagggtggaattaaggagatgttggtcataactataatgagacaagtaattgaata |
206 |
Q |
| |
|
|||||||||||||||||| |||||||| | ||||||||||| |||| |||||| |||||||||||||||||||||||| |
|
|
| T |
29587268 |
gaaaataggggtcgagggaaaaagaggaggaaattaaggagaagttgatcataattataatgagacaagtaattgaata |
29587190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University