View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16020_low_14 (Length: 543)

Name: NF16020_low_14
Description: NF16020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16020_low_14
NF16020_low_14
[»] chr8 (31 HSPs)
chr8 (159-332)||(30587220-30587393)
chr8 (159-242)||(1838389-1838472)
chr8 (476-533)||(30587082-30587139)
chr8 (344-387)||(36826960-36827003)
chr8 (163-224)||(473498-473559)
chr8 (344-385)||(26492412-26492453)
chr8 (14-50)||(30587444-30587480)
chr8 (73-113)||(30587492-30587532)
chr8 (343-387)||(44838768-44838812)
chr8 (402-437)||(30587183-30587218)
chr8 (346-385)||(35063457-35063496)
chr8 (343-389)||(41178060-41178106)
chr8 (346-387)||(9203489-9203530)
chr8 (344-385)||(9331285-9331326)
chr8 (344-385)||(35201979-35202020)
chr8 (344-387)||(8568923-8568966)
chr8 (343-386)||(43844719-43844762)
chr8 (344-386)||(16382421-16382463)
chr8 (344-386)||(43484035-43484077)
chr8 (344-386)||(44872368-44872410)
chr8 (345-386)||(2827351-2827392)
chr8 (344-385)||(3270568-3270609)
chr8 (344-385)||(3270717-3270758)
chr8 (345-386)||(5038980-5039021)
chr8 (343-384)||(7256884-7256925)
chr8 (344-385)||(24726031-24726072)
chr8 (346-387)||(36593564-36593605)
chr8 (344-385)||(44082046-44082087)
chr8 (330-386)||(40443613-40443669)
chr8 (357-385)||(40962056-40962084)
chr8 (345-385)||(41569605-41569645)
[»] chr7 (49 HSPs)
chr7 (162-241)||(7964486-7964565)
chr7 (159-220)||(41521003-41521064)
chr7 (344-386)||(21907286-21907328)
chr7 (344-386)||(26153910-26153952)
chr7 (344-386)||(35160852-35160894)
chr7 (344-385)||(39098291-39098332)
chr7 (346-385)||(40235134-40235173)
chr7 (159-241)||(1824560-1824642)
chr7 (345-387)||(11909258-11909300)
chr7 (343-385)||(25099532-25099574)
chr7 (344-386)||(25099639-25099681)
chr7 (344-386)||(26154018-26154060)
chr7 (345-386)||(5082671-5082712)
chr7 (344-385)||(6580501-6580542)
chr7 (345-386)||(22332292-22332333)
chr7 (352-385)||(22816515-22816548)
chr7 (346-387)||(30005870-30005911)
chr7 (344-385)||(34118452-34118493)
chr7 (344-389)||(35160741-35160786)
chr7 (345-385)||(16100267-16100307)
chr7 (343-387)||(39976146-39976190)
chr7 (344-388)||(48590578-48590622)
chr7 (344-387)||(4027321-4027364)
chr7 (344-387)||(13561123-13561166)
chr7 (344-387)||(14206433-14206476)
chr7 (344-387)||(14215123-14215166)
chr7 (344-387)||(36399889-36399932)
chr7 (343-386)||(39024058-39024101)
chr7 (343-385)||(2738940-2738982)
chr7 (343-385)||(4187988-4188030)
chr7 (343-385)||(5639659-5639701)
chr7 (343-385)||(16100159-16100201)
chr7 (343-385)||(24936677-24936719)
chr7 (344-382)||(25250260-25250298)
chr7 (344-390)||(34118340-34118386)
chr7 (356-385)||(22281996-22282025)
chr7 (354-387)||(22526242-22526275)
chr7 (344-385)||(23735995-23736036)
chr7 (345-385)||(24166367-24166408)
chr7 (345-386)||(25270601-25270642)
chr7 (345-382)||(26743221-26743258)
chr7 (345-386)||(31857028-31857069)
chr7 (344-381)||(45833190-45833227)
chr7 (345-385)||(24166259-24166299)
chr7 (343-387)||(25250151-25250195)
chr7 (345-385)||(28324716-28324756)
chr7 (344-388)||(31857173-31857217)
chr7 (344-380)||(43093520-43093556)
chr7 (343-387)||(45833292-45833336)
[»] chr1 (41 HSPs)
chr1 (159-241)||(23920786-23920870)
chr1 (343-391)||(40328974-40329022)
chr1 (346-385)||(34037916-34037955)
chr1 (344-385)||(15285345-15285386)
chr1 (344-385)||(27146127-27146168)
chr1 (343-383)||(6792369-6792409)
chr1 (343-387)||(16427010-16427054)
chr1 (343-385)||(4974147-4974189)
chr1 (343-385)||(7230005-7230047)
chr1 (343-385)||(16426904-16426946)
chr1 (344-386)||(24023468-24023510)
chr1 (344-386)||(34061938-34061980)
chr1 (343-385)||(40094324-40094366)
chr1 (344-386)||(40907282-40907324)
chr1 (344-385)||(38847405-38847446)
chr1 (344-385)||(47912568-47912609)
chr1 (346-386)||(6169916-6169956)
chr1 (343-387)||(49752119-49752163)
chr1 (346-385)||(4683042-4683081)
chr1 (343-386)||(40341832-40341875)
chr1 (346-385)||(42140327-42140366)
chr1 (343-385)||(435202-435244)
chr1 (344-386)||(1344471-1344513)
chr1 (344-386)||(4838306-4838348)
chr1 (159-213)||(13842998-13843052)
chr1 (344-386)||(13911281-13911323)
chr1 (344-386)||(21852432-21852474)
chr1 (343-385)||(21909943-21909985)
chr1 (343-385)||(29673906-29673947)
chr1 (344-386)||(34755000-34755042)
chr1 (344-385)||(9947750-9947791)
chr1 (344-385)||(11994960-11995001)
chr1 (345-386)||(16661709-16661750)
chr1 (344-385)||(37215275-37215316)
chr1 (345-386)||(43147539-43147580)
chr1 (345-385)||(1358168-1358208)
chr1 (344-380)||(12062195-12062231)
chr1 (345-385)||(12568432-12568472)
chr1 (345-373)||(30287927-30287955)
chr1 (343-387)||(37255120-37255164)
chr1 (345-389)||(42761337-42761381)
[»] chr4 (42 HSPs)
chr4 (344-387)||(34595785-34595828)
chr4 (159-225)||(3607930-3607996)
chr4 (344-385)||(18592341-18592382)
chr4 (344-385)||(24156135-24156176)
chr4 (345-385)||(48088099-48088139)
chr4 (344-387)||(8014177-8014220)
chr4 (343-386)||(38224039-38224082)
chr4 (343-385)||(11347516-11347558)
chr4 (344-386)||(34321485-34321527)
chr4 (344-386)||(34709678-34709720)
chr4 (344-386)||(35003105-35003147)
chr4 (346-388)||(48950583-48950625)
chr4 (344-386)||(56420426-56420468)
chr4 (344-385)||(23795682-23795723)
chr4 (344-385)||(34166108-34166149)
chr4 (345-386)||(35967485-35967526)
chr4 (344-385)||(44495686-44495727)
chr4 (354-387)||(53411082-53411115)
chr4 (344-384)||(18327931-18327971)
chr4 (344-384)||(18437428-18437468)
chr4 (345-385)||(48088006-48088046)
chr4 (346-385)||(24529678-24529717)
chr4 (343-385)||(9011847-9011889)
chr4 (343-385)||(31914430-31914472)
chr4 (343-385)||(34709571-34709613)
chr4 (344-386)||(39294168-39294210)
chr4 (348-386)||(46495638-46495676)
chr4 (344-386)||(49632312-49632354)
chr4 (345-387)||(51394092-51394134)
chr4 (344-378)||(52913636-52913670)
chr4 (344-385)||(1945361-1945402)
chr4 (345-386)||(8560534-8560575)
chr4 (344-389)||(11347111-11347156)
chr4 (345-386)||(48472749-48472790)
chr4 (158-191)||(49234502-49234535)
chr4 (344-385)||(54675372-54675413)
chr4 (345-385)||(4711402-4711442)
chr4 (343-387)||(20787658-20787702)
chr4 (346-386)||(36469976-36470016)
chr4 (345-385)||(40545292-40545332)
chr4 (344-388)||(46996577-46996621)
chr4 (345-377)||(53402995-53403027)
[»] chr3 (50 HSPs)
chr3 (343-385)||(16894272-16894314)
chr3 (345-387)||(46843685-46843727)
chr3 (344-385)||(54008310-54008351)
chr3 (343-387)||(53753824-53753868)
chr3 (344-387)||(32956412-32956455)
chr3 (343-382)||(46843635-46843674)
chr3 (344-386)||(17940183-17940225)
chr3 (344-386)||(25990644-25990686)
chr3 (344-386)||(25995645-25995687)
chr3 (344-386)||(54985518-54985560)
chr3 (345-386)||(14626732-14626773)
chr3 (344-385)||(17004954-17004995)
chr3 (344-385)||(29726377-29726418)
chr3 (344-385)||(29726469-29726510)
chr3 (344-385)||(29726561-29726602)
chr3 (344-385)||(33639017-33639058)
chr3 (344-385)||(43883966-43884007)
chr3 (344-385)||(46967560-46967601)
chr3 (345-385)||(24350898-24350938)
chr3 (344-388)||(48909137-48909181)
chr3 (343-383)||(55198608-55198648)
chr3 (344-387)||(378791-378834)
chr3 (343-386)||(1676265-1676308)
chr3 (351-386)||(19899926-19899961)
chr3 (343-386)||(29076627-29076670)
chr3 (346-385)||(39530500-39530539)
chr3 (346-385)||(40326434-40326473)
chr3 (343-386)||(48895618-48895661)
chr3 (344-387)||(51256561-51256604)
chr3 (344-383)||(54008436-54008475)
chr3 (345-387)||(378709-378751)
chr3 (344-386)||(24226309-24226351)
chr3 (343-389)||(25245250-25245296)
chr3 (345-379)||(25823704-25823738)
chr3 (344-386)||(29726285-29726327)
chr3 (344-386)||(38082617-38082659)
chr3 (344-382)||(38446841-38446879)
chr3 (344-386)||(42790878-42790920)
chr3 (344-378)||(51486429-51486463)
chr3 (348-386)||(55198706-55198744)
chr3 (345-386)||(20547788-20547829)
chr3 (345-386)||(35455558-35455599)
chr3 (344-385)||(42595724-42595765)
chr3 (344-385)||(48895496-48895537)
chr3 (344-389)||(54690541-54690586)
chr3 (343-387)||(24312558-24312602)
chr3 (345-385)||(25823596-25823636)
chr3 (346-386)||(44544258-44544298)
chr3 (345-385)||(44687896-44687936)
chr3 (345-385)||(54690434-54690474)
[»] chr6 (28 HSPs)
chr6 (345-386)||(32364011-32364052)
chr6 (343-385)||(26575653-26575695)
chr6 (344-389)||(32364119-32364164)
chr6 (344-388)||(25363836-25363880)
chr6 (343-382)||(7109015-7109054)
chr6 (344-386)||(667723-667765)
chr6 (344-386)||(7498426-7498468)
chr6 (343-385)||(29938346-29938388)
chr6 (344-385)||(3418859-3418900)
chr6 (344-385)||(4156442-4156483)
chr6 (344-385)||(13902019-13902060)
chr6 (344-385)||(13902125-13902166)
chr6 (343-388)||(21478546-21478591)
chr6 (159-212)||(32868836-32868889)
chr6 (344-388)||(2343334-2343378)
chr6 (159-199)||(6632744-6632784)
chr6 (343-385)||(22341958-22342000)
chr6 (344-386)||(25363732-25363774)
chr6 (347-389)||(28542397-28542439)
chr6 (344-385)||(3343773-3343814)
chr6 (344-385)||(15090996-15091037)
chr6 (352-385)||(21478664-21478697)
chr6 (344-385)||(26597161-26597202)
chr6 (344-388)||(383600-383644)
chr6 (345-385)||(5433435-5433475)
chr6 (343-387)||(17181393-17181437)
chr6 (345-385)||(31759428-31759468)
chr6 (344-388)||(32710065-32710109)
[»] chr5 (50 HSPs)
chr5 (344-388)||(8694586-8694630)
chr5 (158-217)||(1243003-1243062)
chr5 (345-388)||(4151144-4151187)
chr5 (345-388)||(36337838-36337881)
chr5 (343-386)||(40428453-40428496)
chr5 (344-387)||(43585489-43585532)
chr5 (344-386)||(3780975-3781017)
chr5 (343-385)||(8959781-8959823)
chr5 (343-385)||(21344551-21344593)
chr5 (345-386)||(5787474-5787515)
chr5 (344-385)||(9087609-9087650)
chr5 (344-385)||(11380289-11380330)
chr5 (344-385)||(13359157-13359198)
chr5 (344-385)||(13461653-13461694)
chr5 (344-385)||(22473934-22473975)
chr5 (344-385)||(23592088-23592129)
chr5 (344-385)||(34186458-34186499)
chr5 (159-203)||(6689909-6689953)
chr5 (344-388)||(13420537-13420581)
chr5 (344-384)||(13461547-13461587)
chr5 (344-380)||(15966746-15966782)
chr5 (343-386)||(8694478-8694521)
chr5 (344-387)||(14550135-14550178)
chr5 (344-387)||(18753605-18753648)
chr5 (343-386)||(31210362-31210405)
chr5 (343-386)||(34102177-34102220)
chr5 (346-385)||(38860905-38860944)
chr5 (343-385)||(5089555-5089597)
chr5 (344-386)||(6638225-6638267)
chr5 (344-386)||(9012950-9012992)
chr5 (343-385)||(20361973-20362015)
chr5 (345-387)||(20502632-20502674)
chr5 (343-385)||(21369375-21369417)
chr5 (344-386)||(23042065-23042107)
chr5 (344-386)||(23117485-23117527)
chr5 (344-386)||(32146822-32146864)
chr5 (344-386)||(37039795-37039837)
chr5 (344-386)||(43176354-43176396)
chr5 (344-386)||(43585598-43585640)
chr5 (344-385)||(25600655-25600696)
chr5 (343-372)||(25837561-25837590)
chr5 (345-386)||(28907262-28907303)
chr5 (345-386)||(28943657-28943698)
chr5 (344-385)||(31758971-31759012)
chr5 (344-385)||(34102071-34102112)
chr5 (344-385)||(35068022-35068063)
chr5 (343-387)||(5226013-5226057)
chr5 (345-385)||(35469500-35469540)
chr5 (345-385)||(36474906-36474946)
chr5 (345-385)||(38507960-38508000)
[»] chr2 (37 HSPs)
chr2 (343-387)||(29573808-29573852)
chr2 (343-388)||(6006675-6006720)
chr2 (343-390)||(42230513-42230560)
chr2 (344-386)||(4101943-4101985)
chr2 (344-386)||(8079447-8079489)
chr2 (344-386)||(33363662-33363704)
chr2 (343-385)||(37354876-37354918)
chr2 (343-388)||(12017752-12017797)
chr2 (344-385)||(35567144-35567185)
chr2 (345-386)||(35797873-35797914)
chr2 (344-385)||(40846567-40846608)
chr2 (345-386)||(42230626-42230667)
chr2 (345-386)||(42755117-42755158)
chr2 (344-385)||(44949338-44949379)
chr2 (346-386)||(14152185-14152225)
chr2 (345-385)||(33425401-33425441)
chr2 (346-385)||(6006787-6006826)
chr2 (346-385)||(18967329-18967368)
chr2 (343-382)||(40668979-40669018)
chr2 (343-386)||(40669065-40669108)
chr2 (344-379)||(42270086-42270121)
chr2 (344-382)||(5094839-5094877)
chr2 (345-383)||(5717976-5718014)
chr2 (343-385)||(12017854-12017896)
chr2 (344-386)||(26759119-26759161)
chr2 (344-386)||(30202587-30202629)
chr2 (344-386)||(33363554-33363596)
chr2 (343-385)||(35567240-35567282)
chr2 (345-387)||(38721487-38721528)
chr2 (344-386)||(45123790-45123832)
chr2 (345-386)||(4184720-4184761)
chr2 (344-385)||(20556689-20556730)
chr2 (344-385)||(21208995-21209036)
chr2 (344-385)||(33052138-33052179)
chr2 (344-388)||(6048065-6048109)
chr2 (345-385)||(19267936-19267976)
chr2 (345-385)||(38962437-38962477)
[»] scaffold0009 (2 HSPs)
scaffold0009 (343-386)||(8274-8317)
scaffold0009 (343-386)||(49658-49701)
[»] scaffold0136 (2 HSPs)
scaffold0136 (348-385)||(22440-22477)
scaffold0136 (344-385)||(22547-22588)
[»] scaffold0121 (1 HSPs)
scaffold0121 (344-385)||(17537-17578)
[»] scaffold0280 (1 HSPs)
scaffold0280 (346-386)||(13532-13572)
[»] scaffold0047 (1 HSPs)
scaffold0047 (343-386)||(65915-65958)
[»] scaffold0168 (1 HSPs)
scaffold0168 (346-386)||(25008-25048)


Alignment Details
Target: chr8 (Bit Score: 166; Significance: 1e-88; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 159 - 332
Target Start/End: Complemental strand, 30587393 - 30587220
Alignment:
Q  159 atctatagataataataaagcaagctaagtattttggcaagtttgatatttgtcatcttctaagaatgcttgcttcttttaaaaattttagtgtcaagtt 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||    
T  30587393 atctatagataataataaagcaagctaagtattttggcaagtttgatatttgtcatcttctaagaatgcttgcttcttttaaaatttttagtatcaagtt 30587294  T
Q  259 ggaagggttttttatggtatttggagtaatcaagcacgtctgttttcaagaatttgagactgactgattaatac 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30587293 ggaagggttttttatggtatttggagtaatcaagcacgtctgttttcaagaatttgagactgactgattaatac 30587220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 159 - 242
Target Start/End: Complemental strand, 1838472 - 1838389
Alignment:
Q  159 atctatagataataataaagcaagctaagtattttggcaagtttgatatttgtcatcttctaagaatgcttgcttcttttaaaa 242  Q
    ||||||||||||||||||||||| || ||||||||||||||||||  |||||||||||||||||||||||| ||||||||||||    
T  1838472 atctatagataataataaagcaaacttagtattttggcaagtttgccatttgtcatcttctaagaatgcttacttcttttaaaa 1838389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 476 - 533
Target Start/End: Complemental strand, 30587139 - 30587082
Alignment:
Q  476 aataactttaaaacatttttgaactcatagctggtgatttaattcactttgtcctatg 533  Q
    |||||||||||||||||||||||||||||||| || ||||| ||||||||||| ||||    
T  30587139 aataactttaaaacatttttgaactcatagctagttatttacttcactttgtcttatg 30587082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 344 - 387
Target Start/End: Complemental strand, 36827003 - 36826960
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtata 387  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  36827003 ctaaaaaatcaattttgtttatatttaaaaacggagggagtata 36826960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 473559 - 473498
Alignment:
Q  163 atagataataataaagcaagctaagtattttggcaagtttgatatttgtcatcttctaagaa 224  Q
    |||||||||||||||||||| | ||| ||||||||||||||  |||||||||||| ||||||    
T  473559 atagataataataaagcaagtttagtgttttggcaagtttgtcatttgtcatcttttaagaa 473498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 344 - 385
Target Start/End: Original strand, 26492412 - 26492453
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  26492412 ctaaaaagtaaattttgtttatatttaaaaacggagggagta 26492453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 30587480 - 30587444
Alignment:
Q  14 cattttattcacccttacgtctacgtgatttaagaaa 50  Q
    |||||||||||||||||||||||||||||||||||||    
T  30587480 cattttattcacccttacgtctacgtgatttaagaaa 30587444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 73 - 113
Target Start/End: Complemental strand, 30587532 - 30587492
Alignment:
Q  73 gaaaatgaaattcatgttgtatttccttcctacttgtattt 113  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  30587532 gaaaatgaaattcatgttgtatttccttcctacttgcattt 30587492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 343 - 387
Target Start/End: Complemental strand, 44838812 - 44838768
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggagggagtata 387  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||    
T  44838812 tctaaaaagtcaattttgcttatatttaaaaacggatggagtata 44838768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 402 - 437
Target Start/End: Complemental strand, 30587218 - 30587183
Alignment:
Q  402 acattctttcaagttggtcaattgtttcatttcatt 437  Q
    ||||||||||||||||||||||||||||||||||||    
T  30587218 acattctttcaagttggtcaattgtttcatttcatt 30587183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 346 - 385
Target Start/End: Complemental strand, 35063496 - 35063457
Alignment:
Q  346 aaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  35063496 aaaaagtcaattttgcttatatttaaaaacggagggagta 35063457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 389
Target Start/End: Original strand, 41178060 - 41178106
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggagggagtataat 389  Q
    ||||||||||||| |||||||||||||| |||||||| |||||||||    
T  41178060 tctaaaaagtcaaatttgtttatatttagaaacggagagagtataat 41178106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 346 - 387
Target Start/End: Original strand, 9203489 - 9203530
Alignment:
Q  346 aaaaagtcaattttgtttatatttaaaaacggagggagtata 387  Q
    ||||||||| ||||| ||||||||||||||||||||||||||    
T  9203489 aaaaagtcagttttgcttatatttaaaaacggagggagtata 9203530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 344 - 385
Target Start/End: Complemental strand, 9331326 - 9331285
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    ||||||| |||||||||||||||||| |||||||||||||||    
T  9331326 ctaaaaaatcaattttgtttatatttcaaaacggagggagta 9331285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 344 - 385
Target Start/End: Original strand, 35201979 - 35202020
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    ||||||| ||||||||| ||||||||||||||||||||||||    
T  35201979 ctaaaaattcaattttgcttatatttaaaaacggagggagta 35202020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 387
Target Start/End: Original strand, 8568923 - 8568966
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtata 387  Q
    ||||||||||||||||||||||||||  | ||||||||||||||    
T  8568923 ctaaaaagtcaattttgtttatattttgatacggagggagtata 8568966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 386
Target Start/End: Complemental strand, 43844762 - 43844719
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    ||||||||  |||||||| |||||||||||||||||||||||||    
T  43844762 tctaaaaaaccaattttgcttatatttaaaaacggagggagtat 43844719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 344 - 386
Target Start/End: Complemental strand, 16382463 - 16382421
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    ||||||| | |||||| ||||||||||||||||||||||||||    
T  16382463 ctaaaaaattaattttatttatatttaaaaacggagggagtat 16382421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 344 - 386
Target Start/End: Original strand, 43484035 - 43484077
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    ||||||||| || |||| |||||||||||||||||||||||||    
T  43484035 ctaaaaagtaaaatttgcttatatttaaaaacggagggagtat 43484077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 344 - 386
Target Start/End: Original strand, 44872368 - 44872410
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    |||||||  ||||||| ||||||||||||||||||||||||||    
T  44872368 ctaaaaaaccaattttatttatatttaaaaacggagggagtat 44872410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 386
Target Start/End: Complemental strand, 2827392 - 2827351
Alignment:
Q  345 taaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    |||||||||||||||  |||||||||||||||||| ||||||    
T  2827392 taaaaagtcaattttacttatatttaaaaacggagagagtat 2827351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 385
Target Start/End: Complemental strand, 3270609 - 3270568
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    ||||||||||||||||  ||||||||||||||| ||||||||    
T  3270609 ctaaaaagtcaattttacttatatttaaaaacgaagggagta 3270568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 385
Target Start/End: Original strand, 3270717 - 3270758
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    ||||||||||||||||| ||||||| ||| ||||||||||||    
T  3270717 ctaaaaagtcaattttgcttatattaaaagacggagggagta 3270758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 386
Target Start/End: Complemental strand, 5039021 - 5038980
Alignment:
Q  345 taaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    |||||||| || ||||||||||||| ||||||||||||||||    
T  5039021 taaaaagtaaaatttgtttatattttaaaacggagggagtat 5038980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 384
Target Start/End: Complemental strand, 7256925 - 7256884
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggagggagt 384  Q
    |||||||||| || ||||||||||||| ||||||||||||||    
T  7256925 tctaaaaagtaaaatttgtttatatttcaaaacggagggagt 7256884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 385
Target Start/End: Complemental strand, 24726072 - 24726031
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    ||||||||| || |||| ||||||||||||||||||||||||    
T  24726072 ctaaaaagtaaaatttgcttatatttaaaaacggagggagta 24726031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 387
Target Start/End: Original strand, 36593564 - 36593605
Alignment:
Q  346 aaaaagtcaattttgtttatatttaaaaacggagggagtata 387  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||    
T  36593564 aaaaagtcaattttgcttatatttagaaacggaaggagtata 36593605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 385
Target Start/End: Original strand, 44082046 - 44082087
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    |||||||| |||||||| ||||||||||||||||||| ||||    
T  44082046 ctaaaaagccaattttgcttatatttaaaaacggaggtagta 44082087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 330 - 386
Target Start/End: Original strand, 40443613 - 40443669
Alignment:
Q  330 tactctctccgtttctaaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    ||||| ||||||| ||||||||||||||||| ||||||||  | ||||||| |||||    
T  40443613 tactccctccgttcctaaaaagtcaattttgcttatattttgatacggaggaagtat 40443669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 357 - 385
Target Start/End: Complemental strand, 40962084 - 40962056
Alignment:
Q  357 tttgtttatatttaaaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||    
T  40962084 tttgtttatatttaaaaacggagggagta 40962056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 345 - 385
Target Start/End: Original strand, 41569605 - 41569645
Alignment:
Q  345 taaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    |||||||||||||||| ||||||||||| ||||||| ||||    
T  41569605 taaaaagtcaattttgcttatatttaaagacggaggaagta 41569645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 6e-23; HSPs: 49)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 162 - 241
Target Start/End: Complemental strand, 7964565 - 7964486
Alignment:
Q  162 tatagataataataaagcaagctaagtattttggcaagtttgatatttgtcatcttctaagaatgcttgcttcttttaaa 241  Q
    ||||||||||||||||||||||| |||||| |||||||| ||| |||||||||||||| ||||||||| |||||||||||    
T  7964565 tatagataataataaagcaagcttagtattatggcaagtatgacatttgtcatcttcttagaatgcttacttcttttaaa 7964486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 159 - 220
Target Start/End: Original strand, 41521003 - 41521064
Alignment:
Q  159 atctatagataataataaagcaagctaagtattttggcaagtttgatatttgtcatcttcta 220  Q
    |||||||||||||||||||| ||| | ||||||||||||||||||  |||||||||||||||    
T  41521003 atctatagataataataaaggaagtttagtattttggcaagtttgccatttgtcatcttcta 41521064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 344 - 386
Target Start/End: Original strand, 21907286 - 21907328
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  21907286 ctaaaaagtcaattttgtttatatttaaagacggagggagtat 21907328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 344 - 386
Target Start/End: Complemental strand, 26153952 - 26153910
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  26153952 ctaaaaagtcaattttgtttatattaaaaaacggagggagtat 26153910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 344 - 386
Target Start/End: Original strand, 35160852 - 35160894
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  35160852 ctaaaaagtcaattttgcttatatttaaaaacggagggagtat 35160894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 344 - 385
Target Start/End: Complemental strand, 39098332 - 39098291
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  39098332 ctaaaaagtcaattttgtttatatttagaaacggagggagta 39098291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 346 - 385
Target Start/End: Original strand, 40235134 - 40235173
Alignment:
Q  346 aaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  40235134 aaaaattcaattttgtttatatttaaaaacggagggagta 40235173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 241
Target Start/End: Complemental strand, 1824642 - 1824560
Alignment:
Q  159 atctatagataataataaagcaagctaagtattttggcaagtttgatatttgtcatcttctaagaatgcttgcttcttttaaa 241  Q
    ||||||||||||||||||||||| |||||||||||| ||||| ||  |||||||| |   ||||| || || |||||||||||    
T  1824642 atctatagataataataaagcaaactaagtattttgacaagtatgccatttgtcagcaaataagagtgattacttcttttaaa 1824560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 387
Target Start/End: Complemental strand, 11909300 - 11909258
Alignment:
Q  345 taaaaagtcaattttgtttatatttaaaaacggagggagtata 387  Q
    |||||||||||||||| ||||||| ||||||||||||||||||    
T  11909300 taaaaagtcaattttgcttatattaaaaaacggagggagtata 11909258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 385
Target Start/End: Complemental strand, 25099574 - 25099532
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    |||||||||||||||||| ||||||||||| ||||||||||||    
T  25099574 tctaaaaagtcaattttgcttatatttaaagacggagggagta 25099532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 386
Target Start/End: Original strand, 25099639 - 25099681
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    ||||||||| ||||||| |||||||||||||||||||||||||    
T  25099639 ctaaaaagttaattttgcttatatttaaaaacggagggagtat 25099681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 386
Target Start/End: Original strand, 26154018 - 26154060
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    ||||||||||||||||| ||||||||||| |||||||||||||    
T  26154018 ctaaaaagtcaattttgcttatatttaaagacggagggagtat 26154060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 345 - 386
Target Start/End: Complemental strand, 5082712 - 5082671
Alignment:
Q  345 taaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    |||||||||||||||| ||||||||||| |||||||||||||    
T  5082712 taaaaagtcaattttgcttatatttaaagacggagggagtat 5082671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 344 - 385
Target Start/End: Complemental strand, 6580542 - 6580501
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    |||||| |||||||||| ||||||||||||||||||||||||    
T  6580542 ctaaaatgtcaattttgcttatatttaaaaacggagggagta 6580501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 345 - 386
Target Start/End: Complemental strand, 22332333 - 22332292
Alignment:
Q  345 taaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    ||||||| |||||||||||||||||| |||||||||||||||    
T  22332333 taaaaagacaattttgtttatatttagaaacggagggagtat 22332292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 352 - 385
Target Start/End: Complemental strand, 22816548 - 22816515
Alignment:
Q  352 tcaattttgtttatatttaaaaacggagggagta 385  Q
    ||||||||||||||||||||||||||||||||||    
T  22816548 tcaattttgtttatatttaaaaacggagggagta 22816515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 346 - 387
Target Start/End: Complemental strand, 30005911 - 30005870
Alignment:
Q  346 aaaaagtcaattttgtttatatttaaaaacggagggagtata 387  Q
    ||||||||||||||  ||||||||||||||||||||||||||    
T  30005911 aaaaagtcaattttacttatatttaaaaacggagggagtata 30005870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 344 - 385
Target Start/End: Original strand, 34118452 - 34118493
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    ||||||||| ||||||||||||||| ||||||||||||||||    
T  34118452 ctaaaaagttaattttgtttatattaaaaaacggagggagta 34118493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 344 - 389
Target Start/End: Complemental strand, 35160786 - 35160741
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtataat 389  Q
    ||||||||||||||||| ||||||||| ||||||| ||||||||||    
T  35160786 ctaaaaagtcaattttgcttatatttagaaacggatggagtataat 35160741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 385
Target Start/End: Original strand, 16100267 - 16100307
Alignment:
Q  345 taaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    |||||||||||||||| |||||||||||||||| |||||||    
T  16100267 taaaaagtcaattttgcttatatttaaaaacggggggagta 16100307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 387
Target Start/End: Original strand, 39976146 - 39976190
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggagggagtata 387  Q
    |||||||| ||||||||| |||| |||||||||||||||||||||    
T  39976146 tctaaaaaatcaattttgcttatgtttaaaaacggagggagtata 39976190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 388
Target Start/End: Complemental strand, 48590622 - 48590578
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtataa 388  Q
    ||||||||| || |||||||||||||| |||||||||||||||||    
T  48590622 ctaaaaagtaaaatttgtttatatttagaaacggagggagtataa 48590578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 387
Target Start/End: Original strand, 4027321 - 4027364
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtata 387  Q
    ||||||| ||||||||| ||||||||||||||||| ||||||||    
T  4027321 ctaaaaattcaattttgcttatatttaaaaacggatggagtata 4027364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 387
Target Start/End: Complemental strand, 13561166 - 13561123
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtata 387  Q
    ||||||||| ||||||| |||||||||||||||| |||||||||    
T  13561166 ctaaaaagtaaattttgcttatatttaaaaacggtgggagtata 13561123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 387
Target Start/End: Original strand, 14206433 - 14206476
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtata 387  Q
    |||||||||||| |||| ||||||||| ||||||||||||||||    
T  14206433 ctaaaaagtcaaatttgcttatatttagaaacggagggagtata 14206476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 387
Target Start/End: Original strand, 14215123 - 14215166
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtata 387  Q
    |||||||||||| |||| ||||||||| ||||||||||||||||    
T  14215123 ctaaaaagtcaaatttgcttatatttagaaacggagggagtata 14215166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 387
Target Start/End: Complemental strand, 36399932 - 36399889
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtata 387  Q
    ||||||||||||||||| ||||||||||| ||||| ||||||||    
T  36399932 ctaaaaagtcaattttgcttatatttaaagacggaaggagtata 36399889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 386
Target Start/End: Complemental strand, 39024101 - 39024058
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    ||||||| |||||||||| ||||||||||||| |||||||||||    
T  39024101 tctaaaaggtcaattttgcttatatttaaaaatggagggagtat 39024058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 343 - 385
Target Start/End: Original strand, 2738940 - 2738982
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    |||||||| ||||||||||||||||| ||||||||||| ||||    
T  2738940 tctaaaaaatcaattttgtttatattaaaaaacggaggaagta 2738982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 343 - 385
Target Start/End: Complemental strand, 4188030 - 4187988
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    |||||||||| ||||||  ||||||||||||||||||||||||    
T  4188030 tctaaaaagtgaattttacttatatttaaaaacggagggagta 4187988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 343 - 385
Target Start/End: Original strand, 5639659 - 5639701
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    |||||||||||||||||| ||||||||||| ||||| ||||||    
T  5639659 tctaaaaagtcaattttgcttatatttaaagacggatggagta 5639701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 343 - 385
Target Start/End: Complemental strand, 16100201 - 16100159
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    |||||||| ||||||||| ||||||||||||||| ||||||||    
T  16100201 tctaaaaactcaattttgcttatatttaaaaacgaagggagta 16100159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 343 - 385
Target Start/End: Complemental strand, 24936719 - 24936677
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    |||||||| ||||||||| |||||||||||||||||| |||||    
T  24936719 tctaaaaaatcaattttgcttatatttaaaaacggagagagta 24936677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 344 - 382
Target Start/End: Original strand, 25250260 - 25250298
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggaggga 382  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  25250260 ctaaaaagtcaattttacttatatttaaaaacggaggga 25250298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 344 - 390
Target Start/End: Complemental strand, 34118386 - 34118340
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtataatg 390  Q
    ||||||||||||||||| |||| |||||| |||||||||||| ||||    
T  34118386 ctaaaaagtcaattttgcttatttttaaatacggagggagtacaatg 34118340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 385
Target Start/End: Complemental strand, 22282025 - 22281996
Alignment:
Q  356 ttttgtttatatttaaaaacggagggagta 385  Q
    ||||||||||||||||||||||||||||||    
T  22282025 ttttgtttatatttaaaaacggagggagta 22281996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 387
Target Start/End: Complemental strand, 22526275 - 22526242
Alignment:
Q  354 aattttgtttatatttaaaaacggagggagtata 387  Q
    ||||||||||||||||| ||||||||||||||||    
T  22526275 aattttgtttatatttagaaacggagggagtata 22526242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 385
Target Start/End: Complemental strand, 23736036 - 23735995
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    ||||||||| ||||||| ||||||||||||||||| ||||||    
T  23736036 ctaaaaagtaaattttgcttatatttaaaaacggatggagta 23735995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 385
Target Start/End: Original strand, 24166367 - 24166408
Alignment:
Q  345 taaaaagtcaattttgtttatatttaaaa-acggagggagta 385  Q
    |||||| |||||||||||||||||||||| ||||||||||||    
T  24166367 taaaaaatcaattttgtttatatttaaaatacggagggagta 24166408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 386
Target Start/End: Original strand, 25270601 - 25270642
Alignment:
Q  345 taaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    |||||||| || |||| |||||||||||||||||||||||||    
T  25270601 taaaaagtaaaatttgcttatatttaaaaacggagggagtat 25270642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 382
Target Start/End: Original strand, 26743221 - 26743258
Alignment:
Q  345 taaaaagtcaattttgtttatatttaaaaacggaggga 382  Q
    |||||||||||||||  |||||||||||||||||||||    
T  26743221 taaaaagtcaattttacttatatttaaaaacggaggga 26743258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 386
Target Start/End: Complemental strand, 31857069 - 31857028
Alignment:
Q  345 taaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    |||||| ||||||||| ||||||||||| |||||||||||||    
T  31857069 taaaaaatcaattttgattatatttaaagacggagggagtat 31857028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 381
Target Start/End: Complemental strand, 45833227 - 45833190
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggaggg 381  Q
    ||||||||| || |||||||||||||||||||||||||    
T  45833227 ctaaaaagtaaaatttgtttatatttaaaaacggaggg 45833190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 345 - 385
Target Start/End: Complemental strand, 24166299 - 24166259
Alignment:
Q  345 taaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    |||||||||||||||| ||||||||| ||| ||||||||||    
T  24166299 taaaaagtcaattttgcttatatttagaaatggagggagta 24166259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 343 - 387
Target Start/End: Complemental strand, 25250195 - 25250151
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggagggagtata 387  Q
    |||||||||||||||||| ||||||| ||| | ||||||||||||    
T  25250195 tctaaaaagtcaattttgcttatattaaaagatggagggagtata 25250151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 345 - 385
Target Start/End: Complemental strand, 28324756 - 28324716
Alignment:
Q  345 taaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    |||||| ||||||||| ||||||||| ||||||||||||||    
T  28324756 taaaaattcaattttgcttatatttagaaacggagggagta 28324716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #47
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 344 - 388
Target Start/End: Original strand, 31857173 - 31857217
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtataa 388  Q
    ||||||||||||||||| ||||||||| |||| || |||||||||    
T  31857173 ctaaaaagtcaattttgcttatatttataaactgatggagtataa 31857217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #48
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 344 - 380
Target Start/End: Original strand, 43093520 - 43093556
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagg 380  Q
    ||||||||| ||||||| |||||||||||||||||||    
T  43093520 ctaaaaagtaaattttgcttatatttaaaaacggagg 43093556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #49
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 343 - 387
Target Start/End: Original strand, 45833292 - 45833336
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggagggagtata 387  Q
    |||||||||| || |||| ||||||||||||||||||| ||||||    
T  45833292 tctaaaaagtaaaatttgcttatatttaaaaacggaggaagtata 45833336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 41)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 159 - 241
Target Start/End: Complemental strand, 23920870 - 23920786
Alignment:
Q  159 atctatagataata--ataaagcaagctaagtattttggcaagtttgatatttgtcatcttctaagaatgcttgcttcttttaaa 241  Q
    ||||||||||||||  ||||||||| || ||||||||||||||||||  |||||||||||| ||||| |||||||||||| ||||    
T  23920870 atctatagataatataataaagcaaacttagtattttggcaagtttgccatttgtcatcttttaagagtgcttgcttcttctaaa 23920786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 343 - 391
Target Start/End: Original strand, 40328974 - 40329022
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggagggagtataatga 391  Q
    |||||||||| || |||||||||||||||||||||||||||||||||||    
T  40328974 tctaaaaagtaaaatttgtttatatttaaaaacggagggagtataatga 40329022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 346 - 385
Target Start/End: Complemental strand, 34037955 - 34037916
Alignment:
Q  346 aaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  34037955 aaaaagtcaattttgtttatatttaaaaacggagggagta 34037916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 344 - 385
Target Start/End: Original strand, 15285345 - 15285386
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  15285345 ctaaaaagtcaattttgtttatatttaaaaacggagtgagta 15285386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 344 - 385
Target Start/End: Original strand, 27146127 - 27146168
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  27146127 ctaaaaagtcaattttgcttatatttaaaaacggagggagta 27146168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 343 - 383
Target Start/End: Complemental strand, 6792409 - 6792369
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggagggag 383  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  6792409 tctaaaaagtcaattttgcttatatttaaaaacggagggag 6792369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 343 - 387
Target Start/End: Original strand, 16427010 - 16427054
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggagggagtata 387  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||    
T  16427010 tctaaaaaatcaattttgcttatatttaaaaacggagggagtata 16427054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 385
Target Start/End: Original strand, 4974147 - 4974189
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    |||||||||||||||||| ||||||| ||||||||||||||||    
T  4974147 tctaaaaagtcaattttgcttatattaaaaaacggagggagta 4974189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 385
Target Start/End: Complemental strand, 7230047 - 7230005
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    |||||||||| ||||||| ||||||||||||||||||||||||    
T  7230047 tctaaaaagttaattttgcttatatttaaaaacggagggagta 7230005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 385
Target Start/End: Complemental strand, 16426946 - 16426904
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    |||||||||||||||||| ||||||||| ||||||||||||||    
T  16426946 tctaaaaagtcaattttgcttatatttagaaacggagggagta 16426904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 386
Target Start/End: Original strand, 24023468 - 24023510
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    ||||||||| ||||||| |||||||||||||||||||||||||    
T  24023468 ctaaaaagttaattttgcttatatttaaaaacggagggagtat 24023510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 386
Target Start/End: Complemental strand, 34061980 - 34061938
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    ||||||||| || ||||||||||||||||||||||||||||||    
T  34061980 ctaaaaagtaaaatttgtttatatttaaaaacggagggagtat 34061938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 385
Target Start/End: Complemental strand, 40094366 - 40094324
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    |||||||||||||||||| ||||||||||| ||||||||||||    
T  40094366 tctaaaaagtcaattttgcttatatttaaacacggagggagta 40094324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 386
Target Start/End: Original strand, 40907282 - 40907324
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    ||||||||||||||||| ||||||||||| |||||||||||||    
T  40907282 ctaaaaagtcaattttgattatatttaaatacggagggagtat 40907324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 344 - 385
Target Start/End: Original strand, 38847405 - 38847446
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    ||||||||||||||||| |||||||||||||||||| |||||    
T  38847405 ctaaaaagtcaattttgcttatatttaaaaacggagagagta 38847446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 344 - 385
Target Start/End: Complemental strand, 47912609 - 47912568
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    ||||||||||||||||| ||||||||| ||||||||||||||    
T  47912609 ctaaaaagtcaattttgcttatatttagaaacggagggagta 47912568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 346 - 386
Target Start/End: Original strand, 6169916 - 6169956
Alignment:
Q  346 aaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    ||||| |||||||| ||||||||||||||||||||||||||    
T  6169916 aaaaaatcaattttatttatatttaaaaacggagggagtat 6169956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 387
Target Start/End: Original strand, 49752119 - 49752163
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggagggagtata 387  Q
    |||||||||| ||||||||||||||||||||||| | ||||||||    
T  49752119 tctaaaaagttaattttgtttatatttaaaaacgaatggagtata 49752163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 385
Target Start/End: Original strand, 4683042 - 4683081
Alignment:
Q  346 aaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    |||||||||||||| ||||||||||||||| |||||||||    
T  4683042 aaaaagtcaattttatttatatttaaaaacagagggagta 4683081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 386
Target Start/End: Original strand, 40341832 - 40341875
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    |||| ||||| || ||||||||||||||||||||||||||||||    
T  40341832 tctataaagtaaaatttgtttatatttaaaaacggagggagtat 40341875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 385
Target Start/End: Complemental strand, 42140366 - 42140327
Alignment:
Q  346 aaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    ||||| ||||||||| ||||||||||||||||||||||||    
T  42140366 aaaaaatcaattttgcttatatttaaaaacggagggagta 42140327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 343 - 385
Target Start/End: Complemental strand, 435244 - 435202
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    |||||||||||||||||| ||||||||  ||||||||||||||    
T  435244 tctaaaaagtcaattttgcttatattttgaaacggagggagta 435202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 344 - 386
Target Start/End: Original strand, 1344471 - 1344513
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    ||||||||| ||||||| |||||||| ||||||||||||||||    
T  1344471 ctaaaaagtaaattttgcttatattttaaaacggagggagtat 1344513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 344 - 386
Target Start/End: Complemental strand, 4838348 - 4838306
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    ||||||||| || |||||||||||||| |||||||||||||||    
T  4838348 ctaaaaagtaaaatttgtttatatttagaaacggagggagtat 4838306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 13842998 - 13843052
Alignment:
Q  159 atctatagataataataaagcaagctaagtattttggcaagtttgatatttgtca 213  Q
    |||||||||||||||||||||||  | ||| ||||||||||| ||| ||||||||    
T  13842998 atctatagataataataaagcaatgttagttttttggcaagtatgacatttgtca 13843052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 344 - 386
Target Start/End: Complemental strand, 13911323 - 13911281
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    ||||||||||||||||  |||||||| ||||||||||||||||    
T  13911323 ctaaaaagtcaattttacttatattttaaaacggagggagtat 13911281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 344 - 386
Target Start/End: Complemental strand, 21852474 - 21852432
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    ||||||||||||||||| |||||||||||||| || |||||||    
T  21852474 ctaaaaagtcaattttgcttatatttaaaaaccgatggagtat 21852432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 343 - 385
Target Start/End: Original strand, 21909943 - 21909985
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    |||||||||| || |||| ||||||||||||||||||||||||    
T  21909943 tctaaaaagtaaaatttgcttatatttaaaaacggagggagta 21909985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 343 - 385
Target Start/End: Original strand, 29673906 - 29673947
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    |||||||| |||||||| |||||||||||||||||||||||||    
T  29673906 tctaaaaaatcaatttt-tttatatttaaaaacggagggagta 29673947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 344 - 386
Target Start/End: Complemental strand, 34755042 - 34755000
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    ||||||||| ||||||||||||||||  |||||||||||||||    
T  34755042 ctaaaaagtgaattttgtttatattttgaaacggagggagtat 34755000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 385
Target Start/End: Complemental strand, 9947791 - 9947750
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    ||||||| ||||||||| ||||||| ||||||||||||||||    
T  9947791 ctaaaaaatcaattttgcttatattaaaaaacggagggagta 9947750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 385
Target Start/End: Original strand, 11994960 - 11995001
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    ||||||||| ||||||||||||||||  ||||||||||||||    
T  11994960 ctaaaaagtgaattttgtttatattttgaaacggagggagta 11995001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 386
Target Start/End: Original strand, 16661709 - 16661750
Alignment:
Q  345 taaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    |||||||| ||||||||||||||||  |||||||||||||||    
T  16661709 taaaaagtgaattttgtttatatttttaaacggagggagtat 16661750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 385
Target Start/End: Original strand, 37215275 - 37215316
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    ||||||||||||||||| || |||| ||||||||||||||||    
T  37215275 ctaaaaagtcaattttgcttgtattaaaaaacggagggagta 37215316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 386
Target Start/End: Original strand, 43147539 - 43147580
Alignment:
Q  345 taaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    |||||||| ||||||| |||||||| ||||||||||||||||    
T  43147539 taaaaagtgaattttgcttatattttaaaacggagggagtat 43147580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 345 - 385
Target Start/End: Complemental strand, 1358208 - 1358168
Alignment:
Q  345 taaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    |||||||||||||||  |||||||||| |||||||||||||    
T  1358208 taaaaagtcaattttacttatatttaataacggagggagta 1358168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 344 - 380
Target Start/End: Complemental strand, 12062231 - 12062195
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagg 380  Q
    ||||||||||||||||  |||||||||||||||||||    
T  12062231 ctaaaaagtcaattttccttatatttaaaaacggagg 12062195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 345 - 385
Target Start/End: Complemental strand, 12568472 - 12568432
Alignment:
Q  345 taaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    |||||||| ||||||| |||||||| |||||||||||||||    
T  12568472 taaaaagtgaattttgcttatattttaaaacggagggagta 12568432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 345 - 373
Target Start/End: Complemental strand, 30287955 - 30287927
Alignment:
Q  345 taaaaagtcaattttgtttatatttaaaa 373  Q
    |||||||||||||||||||||||||||||    
T  30287955 taaaaagtcaattttgtttatatttaaaa 30287927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 343 - 387
Target Start/End: Complemental strand, 37255164 - 37255120
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggagggagtata 387  Q
    |||||||||| || |||| ||||||| ||||||||||||||||||    
T  37255164 tctaaaaagtaaaatttgcttatattaaaaaacggagggagtata 37255120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 345 - 389
Target Start/End: Original strand, 42761337 - 42761381
Alignment:
Q  345 taaaaagtcaattttgtttatatttaaaaacggagggagtataat 389  Q
    |||||||| ||||||  |||||||| |||||||||||||||||||    
T  42761337 taaaaagtaaattttacttatattttaaaacggagggagtataat 42761381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 42)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 344 - 387
Target Start/End: Original strand, 34595785 - 34595828
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtata 387  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  34595785 ctaaaaagtcaattttgtttatatttaaaaacggagggagtata 34595828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 159 - 225
Target Start/End: Complemental strand, 3607996 - 3607930
Alignment:
Q  159 atctatagataataataaagcaagctaagtattttggcaagtttgatatttgtcatcttctaagaat 225  Q
    ||||||||||||||||||| ||| || | ||||||||||||||||  |||||||||||| |||||||    
T  3607996 atctatagataataataaaacaaactcattattttggcaagtttgtcatttgtcatcttttaagaat 3607930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 344 - 385
Target Start/End: Complemental strand, 18592382 - 18592341
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  18592382 ctaaaaagtcaattttgcttatatttaaaaacggagggagta 18592341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 344 - 385
Target Start/End: Complemental strand, 24156176 - 24156135
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  24156176 ctaaaaagtcaattttgcttatatttaaaaacggagggagta 24156135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 345 - 385
Target Start/End: Original strand, 48088099 - 48088139
Alignment:
Q  345 taaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  48088099 taaaaagtcaattttgcttatatttaaaaacggagggagta 48088139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 344 - 387
Target Start/End: Complemental strand, 8014220 - 8014177
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtata 387  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||    
T  8014220 ctaaaaagtcaattttgcttatatttaaatacggagggagtata 8014177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 343 - 386
Target Start/End: Original strand, 38224039 - 38224082
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    |||||||||||||||||| |||||||||||||||||| ||||||    
T  38224039 tctaaaaagtcaattttgcttatatttaaaaacggagagagtat 38224082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 385
Target Start/End: Original strand, 11347516 - 11347558
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    |||| ||||||||||||||||||||||||||||| ||||||||    
T  11347516 tctagaaagtcaattttgtttatatttaaaaacgaagggagta 11347558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 386
Target Start/End: Original strand, 34321485 - 34321527
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    ||||||||||||||||||||||||||| ||||||| |||||||    
T  34321485 ctaaaaagtcaattttgtttatatttagaaacggaaggagtat 34321527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 386
Target Start/End: Original strand, 34709678 - 34709720
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    ||||||||||||||||| ||||||| |||||||||||||||||    
T  34709678 ctaaaaagtcaattttgcttatattaaaaaacggagggagtat 34709720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 386
Target Start/End: Complemental strand, 35003147 - 35003105
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    |||||||||||||||| |||||||||| |||||||||||||||    
T  35003147 ctaaaaagtcaattttatttatatttagaaacggagggagtat 35003105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 388
Target Start/End: Original strand, 48950583 - 48950625
Alignment:
Q  346 aaaaagtcaattttgtttatatttaaaaacggagggagtataa 388  Q
    ||||||| ||||||||||||||||| |||||||||||||||||    
T  48950583 aaaaagtaaattttgtttatatttagaaacggagggagtataa 48950625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 386
Target Start/End: Complemental strand, 56420468 - 56420426
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    ||||||||| || ||||||||||||||||||||||||||||||    
T  56420468 ctaaaaagtaaaatttgtttatatttaaaaacggagggagtat 56420426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 344 - 385
Target Start/End: Original strand, 23795682 - 23795723
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    |||||||| |||||||| ||||||||||||||||||||||||    
T  23795682 ctaaaaagccaattttgcttatatttaaaaacggagggagta 23795723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 344 - 385
Target Start/End: Complemental strand, 34166149 - 34166108
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    ||||||||||||||||| ||||||||| ||||||||||||||    
T  34166149 ctaaaaagtcaattttgcttatatttagaaacggagggagta 34166108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 345 - 386
Target Start/End: Original strand, 35967485 - 35967526
Alignment:
Q  345 taaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    |||||||||||||||| ||||||||| |||||||||||||||    
T  35967485 taaaaagtcaattttgcttatatttagaaacggagggagtat 35967526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 344 - 385
Target Start/End: Complemental strand, 44495727 - 44495686
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    |||||||||||| |||| ||||||||||||||||||||||||    
T  44495727 ctaaaaagtcaaatttgcttatatttaaaaacggagggagta 44495686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 354 - 387
Target Start/End: Original strand, 53411082 - 53411115
Alignment:
Q  354 aattttgtttatatttaaaaacggagggagtata 387  Q
    ||||||||||||||||||||||||||||||||||    
T  53411082 aattttgtttatatttaaaaacggagggagtata 53411115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 384
Target Start/End: Complemental strand, 18327971 - 18327931
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagt 384  Q
    |||||||||||||||| |||||||| |||||||||||||||    
T  18327971 ctaaaaagtcaattttatttatattaaaaaacggagggagt 18327931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 384
Target Start/End: Original strand, 18437428 - 18437468
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagt 384  Q
    |||||||||||||||| |||||||| |||||||||||||||    
T  18437428 ctaaaaagtcaattttatttatattaaaaaacggagggagt 18437468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 385
Target Start/End: Complemental strand, 48088046 - 48088006
Alignment:
Q  345 taaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    |||||||||||||||| ||||||||||||||||||| ||||    
T  48088046 taaaaagtcaattttgcttatatttaaaaacggaggaagta 48088006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 385
Target Start/End: Original strand, 24529678 - 24529717
Alignment:
Q  346 aaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    ||||||||||||||  ||||||||||||||||||||||||    
T  24529678 aaaaagtcaattttacttatatttaaaaacggagggagta 24529717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 343 - 385
Target Start/End: Original strand, 9011847 - 9011889
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    |||||||||| ||||||| |||||||| |||||||||||||||    
T  9011847 tctaaaaagtgaattttgcttatattttaaaacggagggagta 9011889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 343 - 385
Target Start/End: Original strand, 31914430 - 31914472
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    |||||||||||||||||  ||||||||| ||||||||||||||    
T  31914430 tctaaaaagtcaattttacttatatttagaaacggagggagta 31914472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 343 - 385
Target Start/End: Complemental strand, 34709613 - 34709571
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    |||||||||| ||||||| ||||||||||| ||||||||||||    
T  34709613 tctaaaaagtaaattttgcttatatttaaatacggagggagta 34709571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 344 - 386
Target Start/End: Complemental strand, 39294210 - 39294168
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    |||||||||||| ||| |||||||||||||| |||||||||||    
T  39294210 ctaaaaagtcaaatttatttatatttaaaaagggagggagtat 39294168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 348 - 386
Target Start/End: Original strand, 46495638 - 46495676
Alignment:
Q  348 aaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    ||||||||||||| ||||||||||||| |||||||||||    
T  46495638 aaagtcaattttgcttatatttaaaaatggagggagtat 46495676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 344 - 386
Target Start/End: Complemental strand, 49632354 - 49632312
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    ||||||||||||||||| ||||||||||| ||||| |||||||    
T  49632354 ctaaaaagtcaattttgcttatatttaaagacggatggagtat 49632312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 345 - 387
Target Start/End: Complemental strand, 51394134 - 51394092
Alignment:
Q  345 taaaaagtcaattttgtttatatttaaaaacggagggagtata 387  Q
    |||||||||||||||  ||||||||||||||||||| ||||||    
T  51394134 taaaaagtcaattttacttatatttaaaaacggaggaagtata 51394092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 344 - 378
Target Start/End: Complemental strand, 52913670 - 52913636
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacgga 378  Q
    ||||||||| |||||||||||||||||||||||||    
T  52913670 ctaaaaagtaaattttgtttatatttaaaaacgga 52913636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 385
Target Start/End: Complemental strand, 1945402 - 1945361
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    ||||||||||||||||| ||||||||  ||||||||||||||    
T  1945402 ctaaaaagtcaattttgcttatattttgaaacggagggagta 1945361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 386
Target Start/End: Original strand, 8560534 - 8560575
Alignment:
Q  345 taaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    |||||||||||||||  ||||||| |||||||||||||||||    
T  8560534 taaaaagtcaattttagttatattaaaaaacggagggagtat 8560575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 389
Target Start/End: Complemental strand, 11347156 - 11347111
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtataat 389  Q
    ||||||| | ||||||| ||||||||||||||||| ||||||||||    
T  11347156 ctaaaaaataaattttgcttatatttaaaaacggatggagtataat 11347111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 386
Target Start/End: Complemental strand, 48472790 - 48472749
Alignment:
Q  345 taaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    |||||||||||||||  ||||||||||||||||||| |||||    
T  48472790 taaaaagtcaattttacttatatttaaaaacggaggaagtat 48472749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 191
Target Start/End: Complemental strand, 49234535 - 49234502
Alignment:
Q  158 tatctatagataataataaagcaagctaagtatt 191  Q
    |||||||||||||||||||||||| |||||||||    
T  49234535 tatctatagataataataaagcaacctaagtatt 49234502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 385
Target Start/End: Original strand, 54675372 - 54675413
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    ||||||||||||||||| ||||||||| ||||||| ||||||    
T  54675372 ctaaaaagtcaattttgcttatatttagaaacggaaggagta 54675413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 345 - 385
Target Start/End: Complemental strand, 4711442 - 4711402
Alignment:
Q  345 taaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    |||||| ||||||||||||||| ||| ||||||||||||||    
T  4711442 taaaaaatcaattttgtttataattagaaacggagggagta 4711402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 343 - 387
Target Start/End: Original strand, 20787658 - 20787702
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggagggagtata 387  Q
    |||||||||||||||||  ||||||| ||| ||||||||||||||    
T  20787658 tctaaaaagtcaattttacttatattaaaatacggagggagtata 20787702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 346 - 386
Target Start/End: Original strand, 36469976 - 36470016
Alignment:
Q  346 aaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    ||||||||||||||| ||||||||| || ||||||||||||    
T  36469976 aaaaagtcaattttgcttatatttagaatcggagggagtat 36470016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 345 - 385
Target Start/End: Complemental strand, 40545332 - 40545292
Alignment:
Q  345 taaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    |||||||||||||||  ||||||||||| ||||||||||||    
T  40545332 taaaaagtcaattttacttatatttaaagacggagggagta 40545292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 344 - 388
Target Start/End: Original strand, 46996577 - 46996621
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtataa 388  Q
    ||||||||| || ||||||||||||||| |||||| |||||||||    
T  46996577 ctaaaaagtaaaatttgtttatatttaagaacggaaggagtataa 46996621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 345 - 377
Target Start/End: Complemental strand, 53403027 - 53402995
Alignment:
Q  345 taaaaagtcaattttgtttatatttaaaaacgg 377  Q
    |||||||||||||||| ||||||||||||||||    
T  53403027 taaaaagtcaattttgcttatatttaaaaacgg 53402995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 50)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 343 - 385
Target Start/End: Original strand, 16894272 - 16894314
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  16894272 tctaaaaagtcaattttgtttatatttaaaaacggagggagta 16894314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 345 - 387
Target Start/End: Original strand, 46843685 - 46843727
Alignment:
Q  345 taaaaagtcaattttgtttatatttaaaaacggagggagtata 387  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  46843685 taaaaagtcaattttgcttatatttaaaaacggagggagtata 46843727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 344 - 385
Target Start/End: Original strand, 54008310 - 54008351
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  54008310 ctaaaaagtcaattttgcttatatttaaaaacggagggagta 54008351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 343 - 387
Target Start/End: Complemental strand, 53753868 - 53753824
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggagggagtata 387  Q
    |||||||||||||||||||||||||||||||| || |||||||||    
T  53753868 tctaaaaagtcaattttgtttatatttaaaaatggggggagtata 53753824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 344 - 387
Target Start/End: Complemental strand, 32956455 - 32956412
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtata 387  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||    
T  32956455 ctaaaaagtcaattttgcttatatttaaaaacggaggaagtata 32956412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 343 - 382
Target Start/End: Complemental strand, 46843674 - 46843635
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggaggga 382  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  46843674 tctaaaaagtaaattttgtttatatttaaaaacggaggga 46843635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 386
Target Start/End: Complemental strand, 17940225 - 17940183
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    ||||||||| ||||||| |||||||||||||||||||||||||    
T  17940225 ctaaaaagtaaattttgcttatatttaaaaacggagggagtat 17940183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 386
Target Start/End: Complemental strand, 25990686 - 25990644
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    |||||||||||||||||  ||||||||||||||||||||||||    
T  25990686 ctaaaaagtcaattttgcatatatttaaaaacggagggagtat 25990644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 386
Target Start/End: Original strand, 25995645 - 25995687
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    |||||||||||| |||| |||||||||||||||||||||||||    
T  25995645 ctaaaaagtcaaatttgcttatatttaaaaacggagggagtat 25995687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 386
Target Start/End: Complemental strand, 54985560 - 54985518
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    ||||| ||||||||||||||||||||||||||||| |||||||    
T  54985560 ctaaagagtcaattttgtttatatttaaaaacggatggagtat 54985518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 345 - 386
Target Start/End: Original strand, 14626732 - 14626773
Alignment:
Q  345 taaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    |||||||||||||||| ||||||||||| |||||||||||||    
T  14626732 taaaaagtcaattttgcttatatttaaagacggagggagtat 14626773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 344 - 385
Target Start/End: Complemental strand, 17004995 - 17004954
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    ||||||| ||||||||| ||||||||||||||||||||||||    
T  17004995 ctaaaaaatcaattttgcttatatttaaaaacggagggagta 17004954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 344 - 385
Target Start/End: Original strand, 29726377 - 29726418
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    ||||||||||||||||| ||||||||||| ||||||||||||    
T  29726377 ctaaaaagtcaattttgcttatatttaaagacggagggagta 29726418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 344 - 385
Target Start/End: Original strand, 29726469 - 29726510
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    ||||||||||||||||| ||||||||||| ||||||||||||    
T  29726469 ctaaaaagtcaattttgcttatatttaaagacggagggagta 29726510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 344 - 385
Target Start/End: Original strand, 29726561 - 29726602
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    ||||||||||||||||| ||||||||||| ||||||||||||    
T  29726561 ctaaaaagtcaattttgcttatatttaaagacggagggagta 29726602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 344 - 385
Target Start/End: Original strand, 33639017 - 33639058
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    ||||||||| ||||||| ||||||||||||||||||||||||    
T  33639017 ctaaaaagtgaattttgcttatatttaaaaacggagggagta 33639058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 344 - 385
Target Start/End: Original strand, 43883966 - 43884007
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    ||||||||| |||||| |||||||||||||||||||||||||    
T  43883966 ctaaaaagttaattttatttatatttaaaaacggagggagta 43884007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 344 - 385
Target Start/End: Original strand, 46967560 - 46967601
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    ||||||||||||||||| ||||||||||| ||||||||||||    
T  46967560 ctaaaaagtcaattttgcttatatttaaagacggagggagta 46967601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 385
Target Start/End: Original strand, 24350898 - 24350938
Alignment:
Q  345 taaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    |||||||||||||||  ||||||||||||||||||||||||    
T  24350898 taaaaagtcaattttccttatatttaaaaacggagggagta 24350938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 388
Target Start/End: Original strand, 48909137 - 48909181
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtataa 388  Q
    ||||||||| ||||||| |||||||| ||||||||||||||||||    
T  48909137 ctaaaaagtgaattttgcttatattttaaaacggagggagtataa 48909181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 383
Target Start/End: Complemental strand, 55198648 - 55198608
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggagggag 383  Q
    |||||||||||||||||  ||||||||||||||||||||||    
T  55198648 tctaaaaagtcaattttacttatatttaaaaacggagggag 55198608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 387
Target Start/End: Original strand, 378791 - 378834
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtata 387  Q
    ||||||||| ||||||| |||||||| |||||||||||||||||    
T  378791 ctaaaaagtgaattttgcttatattttaaaacggagggagtata 378834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 386
Target Start/End: Complemental strand, 1676308 - 1676265
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    ||||||||||||||||| |||||||||||||||| || ||||||    
T  1676308 tctaaaaagtcaattttatttatatttaaaaacgaagagagtat 1676265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 386
Target Start/End: Original strand, 19899926 - 19899961
Alignment:
Q  351 gtcaattttgtttatatttaaaaacggagggagtat 386  Q
    |||||||||||||||||| |||||||||||||||||    
T  19899926 gtcaattttgtttatattaaaaaacggagggagtat 19899961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 386
Target Start/End: Original strand, 29076627 - 29076670
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    |||||||||||||||||| ||||||||| ||| |||||||||||    
T  29076627 tctaaaaagtcaattttgcttatatttagaaatggagggagtat 29076670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 385
Target Start/End: Original strand, 39530500 - 39530539
Alignment:
Q  346 aaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    ||||||||||||||| ||||||||||||| ||||||||||    
T  39530500 aaaaagtcaattttgcttatatttaaaaatggagggagta 39530539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 385
Target Start/End: Complemental strand, 40326473 - 40326434
Alignment:
Q  346 aaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    |||||||||||||| |||||||||||||| ||||||||||    
T  40326473 aaaaagtcaattttatttatatttaaaaatggagggagta 40326434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 386
Target Start/End: Original strand, 48895618 - 48895661
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    |||||||||| ||||||| |||||||| ||||||||||||||||    
T  48895618 tctaaaaagtgaattttgcttatattttaaaacggagggagtat 48895661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 387
Target Start/End: Complemental strand, 51256604 - 51256561
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtata 387  Q
    ||||||||| || |||||||||||||| ||||||||||||||||    
T  51256604 ctaaaaagtaaaatttgtttatatttagaaacggagggagtata 51256561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 383
Target Start/End: Complemental strand, 54008475 - 54008436
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggag 383  Q
    ||||||||| ||||||||||||||||||| ||||||||||    
T  54008475 ctaaaaagttaattttgtttatatttaaacacggagggag 54008436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 345 - 387
Target Start/End: Complemental strand, 378751 - 378709
Alignment:
Q  345 taaaaagtcaattttgtttatatttaaaaacggagggagtata 387  Q
    |||||||| ||||||| |||||||| |||||||||||||||||    
T  378751 taaaaagtgaattttgcttatattttaaaacggagggagtata 378709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 344 - 386
Target Start/End: Original strand, 24226309 - 24226351
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    ||||||||||||||||||||||||| ||| ||||| |||||||    
T  24226309 ctaaaaagtcaattttgtttatattaaaatacggaaggagtat 24226351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 343 - 389
Target Start/End: Original strand, 25245250 - 25245296
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggagggagtataat 389  Q
    |||||||||||||||||  ||||||||| ||||||| ||||||||||    
T  25245250 tctaaaaagtcaattttacttatatttagaaacggatggagtataat 25245296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 345 - 379
Target Start/End: Original strand, 25823704 - 25823738
Alignment:
Q  345 taaaaagtcaattttgtttatatttaaaaacggag 379  Q
    |||||||||||||||| ||||||||||||||||||    
T  25823704 taaaaagtcaattttgcttatatttaaaaacggag 25823738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 344 - 386
Target Start/End: Complemental strand, 29726327 - 29726285
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    ||||||||||||||||| ||||||||||| | |||||||||||    
T  29726327 ctaaaaagtcaattttgcttatatttaaacatggagggagtat 29726285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 344 - 386
Target Start/End: Original strand, 38082617 - 38082659
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    ||||||||| ||||||||||||||||  |||||||||||||||    
T  38082617 ctaaaaagtgaattttgtttatattttgaaacggagggagtat 38082659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 344 - 382
Target Start/End: Original strand, 38446841 - 38446879
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggaggga 382  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  38446841 ctaaaaagtcaattttacttatatttaaaaacggaggga 38446879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 344 - 386
Target Start/End: Complemental strand, 42790920 - 42790878
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    ||||||| ||| ||||||||||||||||||||| |||||||||    
T  42790920 ctaaaaattcatttttgtttatatttaaaaacgaagggagtat 42790878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 344 - 378
Target Start/End: Complemental strand, 51486463 - 51486429
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacgga 378  Q
    ||||||||||||||||| |||||||||||||||||    
T  51486463 ctaaaaagtcaattttgcttatatttaaaaacgga 51486429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 348 - 386
Target Start/End: Original strand, 55198706 - 55198744
Alignment:
Q  348 aaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    ||||||||||||  |||||||||||||||||||||||||    
T  55198706 aaagtcaattttacttatatttaaaaacggagggagtat 55198744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 386
Target Start/End: Complemental strand, 20547829 - 20547788
Alignment:
Q  345 taaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    |||||||| ||||||| |||||||| ||||||||||||||||    
T  20547829 taaaaagtgaattttgcttatattttaaaacggagggagtat 20547788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 386
Target Start/End: Complemental strand, 35455599 - 35455558
Alignment:
Q  345 taaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    |||||||| ||||||| |||||||| ||||||||||||||||    
T  35455599 taaaaagtgaattttgcttatattttaaaacggagggagtat 35455558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 385
Target Start/End: Complemental strand, 42595765 - 42595724
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    ||||||||| || ||||||||||||| |||||||||||||||    
T  42595765 ctaaaaagtaaaatttgtttatattttaaaacggagggagta 42595724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 385
Target Start/End: Complemental strand, 48895537 - 48895496
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    ||||||||| ||||||| |||||||| |||||||||||||||    
T  48895537 ctaaaaagtgaattttgcttatattttaaaacggagggagta 48895496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 389
Target Start/End: Original strand, 54690541 - 54690586
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtataat 389  Q
    |||||||||||| |||| ||||||||| ||||||||||| ||||||    
T  54690541 ctaaaaagtcaaatttgcttatatttagaaacggagggaatataat 54690586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 343 - 387
Target Start/End: Complemental strand, 24312602 - 24312558
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggagggagtata 387  Q
    |||||||||| ||||||||||||||||| ||| |||||| |||||    
T  24312602 tctaaaaagtaaattttgtttatatttataaagggagggtgtata 24312558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 345 - 385
Target Start/End: Complemental strand, 25823636 - 25823596
Alignment:
Q  345 taaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    |||||||| ||||||| ||||||||||||||||| ||||||    
T  25823636 taaaaagtgaattttgcttatatttaaaaacggaaggagta 25823596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 346 - 386
Target Start/End: Original strand, 44544258 - 44544298
Alignment:
Q  346 aaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    ||||||||||||||| |||||||||||||| || |||||||    
T  44544258 aaaaagtcaattttgcttatatttaaaaacagatggagtat 44544298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 345 - 385
Target Start/End: Complemental strand, 44687936 - 44687896
Alignment:
Q  345 taaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    |||||||| ||||||| ||||||||| ||||||||||||||    
T  44687936 taaaaagtgaattttgcttatatttagaaacggagggagta 44687896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 345 - 385
Target Start/End: Complemental strand, 54690474 - 54690434
Alignment:
Q  345 taaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    ||||||||||| |||| |||||||||| |||||||||||||    
T  54690474 taaaaagtcaaatttgcttatatttaagaacggagggagta 54690434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 345 - 386
Target Start/End: Complemental strand, 32364052 - 32364011
Alignment:
Q  345 taaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  32364052 taaaaagtcaattttgtttatatttaaaaacggagggagtat 32364011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 343 - 385
Target Start/End: Complemental strand, 26575695 - 26575653
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  26575695 tctaaaaaatcaattttgtttatatttaaaaacggagggagta 26575653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 344 - 389
Target Start/End: Original strand, 32364119 - 32364164
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtataat 389  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||    
T  32364119 ctaaaaagtaaattttgcttatatttaaaaacggagggagtataat 32364164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 344 - 388
Target Start/End: Original strand, 25363836 - 25363880
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtataa 388  Q
    ||||||||||||||||| || ||||||||||||||||||||||||    
T  25363836 ctaaaaagtcaattttgcttgtatttaaaaacggagggagtataa 25363880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 343 - 382
Target Start/End: Complemental strand, 7109054 - 7109015
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggaggga 382  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  7109054 tctaaaaagttaattttgtttatatttaaaaacggaggga 7109015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 386
Target Start/End: Complemental strand, 667765 - 667723
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    ||||||| ||||||||| |||||||||||||||||||||||||    
T  667765 ctaaaaaatcaattttgcttatatttaaaaacggagggagtat 667723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 386
Target Start/End: Complemental strand, 7498468 - 7498426
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    ||||||||||||||||  |||||||||||||||||||||||||    
T  7498468 ctaaaaagtcaattttacttatatttaaaaacggagggagtat 7498426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 385
Target Start/End: Complemental strand, 29938388 - 29938346
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    |||||||||||||||||| ||||||||||||||| ||||||||    
T  29938388 tctaaaaagtcaattttgcttatatttaaaaacgaagggagta 29938346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 344 - 385
Target Start/End: Original strand, 3418859 - 3418900
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    ||||||||||||||||| |||||||||||||||||| |||||    
T  3418859 ctaaaaagtcaattttgcttatatttaaaaacggagtgagta 3418900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 344 - 385
Target Start/End: Original strand, 4156442 - 4156483
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    ||||||||||||||||| ||||||||||||| ||||||||||    
T  4156442 ctaaaaagtcaattttgcttatatttaaaaatggagggagta 4156483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 344 - 385
Target Start/End: Complemental strand, 13902060 - 13902019
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    ||||||||||||||||| ||||||||||||||||| ||||||    
T  13902060 ctaaaaagtcaattttgcttatatttaaaaacggatggagta 13902019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 344 - 385
Target Start/End: Original strand, 13902125 - 13902166
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    ||||||||||||||||||||||||||||| |||| |||||||    
T  13902125 ctaaaaagtcaattttgtttatatttaaagacggggggagta 13902166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 343 - 388
Target Start/End: Complemental strand, 21478591 - 21478546
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggagggagtataa 388  Q
    |||||||||||||||||||||||||||  | |||||||||||||||    
T  21478591 tctaaaaagtcaattttgtttatattttgatacggagggagtataa 21478546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 32868889 - 32868836
Alignment:
Q  159 atctatagataataataaagcaagctaagtattttggcaagtttgatatttgtc 212  Q
    |||||||||||||||||||||||||| |||||| | |||||| ||| |||||||    
T  32868889 atctatagataataataaagcaagcttagtattatagcaagtatgacatttgtc 32868836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 388
Target Start/End: Complemental strand, 2343378 - 2343334
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtataa 388  Q
    ||||||||||||||||  |||||||||||||||||| ||||||||    
T  2343378 ctaaaaagtcaattttacttatatttaaaaacggagcgagtataa 2343334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 199
Target Start/End: Original strand, 6632744 - 6632784
Alignment:
Q  159 atctatagataataataaagcaagctaagtattttggcaag 199  Q
    |||||||||||||||||||||||||| ||||||||| ||||    
T  6632744 atctatagataataataaagcaagctcagtattttgacaag 6632784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 343 - 385
Target Start/End: Complemental strand, 22342000 - 22341958
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    |||||||||| ||||||| |||||||| |||||||||||||||    
T  22342000 tctaaaaagtgaattttgcttatattttaaaacggagggagta 22341958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 344 - 386
Target Start/End: Complemental strand, 25363774 - 25363732
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    ||||||| ||||||||| ||||||||||||||||| |||||||    
T  25363774 ctaaaaaatcaattttgcttatatttaaaaacggaaggagtat 25363732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 347 - 389
Target Start/End: Original strand, 28542397 - 28542439
Alignment:
Q  347 aaaagtcaattttgtttatatttaaaaacggagggagtataat 389  Q
    |||||||||||||| ||||||||||| |||||||| |||||||    
T  28542397 aaaagtcaattttgcttatatttaaagacggagggtgtataat 28542439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 385
Target Start/End: Complemental strand, 3343814 - 3343773
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    ||||||| ||| ||||| ||||||||||||||||||||||||    
T  3343814 ctaaaaaatcatttttgcttatatttaaaaacggagggagta 3343773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 385
Target Start/End: Original strand, 15090996 - 15091037
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    ||||||||| |||||||||||||||| |||||||| ||||||    
T  15090996 ctaaaaagtgaattttgtttatattttaaaacggaaggagta 15091037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 385
Target Start/End: Original strand, 21478664 - 21478697
Alignment:
Q  352 tcaattttgtttatatttaaaaacggagggagta 385  Q
    |||||||| |||||||||||||||||||||||||    
T  21478664 tcaattttatttatatttaaaaacggagggagta 21478697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 385
Target Start/End: Complemental strand, 26597202 - 26597161
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    ||||||||| ||||||||||||||||  ||||||||||||||    
T  26597202 ctaaaaagtgaattttgtttatattttgaaacggagggagta 26597161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 344 - 388
Target Start/End: Complemental strand, 383644 - 383600
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtataa 388  Q
    ||||||||| ||||||| ||||||||  |||||||||||||||||    
T  383644 ctaaaaagtgaattttgcttatattttgaaacggagggagtataa 383600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 345 - 385
Target Start/End: Original strand, 5433435 - 5433475
Alignment:
Q  345 taaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    ||||||||||| |||| ||||| ||||||||||||||||||    
T  5433435 taaaaagtcaaatttgcttataattaaaaacggagggagta 5433475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 343 - 387
Target Start/End: Original strand, 17181393 - 17181437
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggagggagtata 387  Q
    |||||||||| || |||||||||||||||||||||| | ||||||    
T  17181393 tctaaaaagtaaaatttgtttatatttaaaaacggatgaagtata 17181437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 345 - 385
Target Start/End: Original strand, 31759428 - 31759468
Alignment:
Q  345 taaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    |||||||||||||||| ||||||||| ||||||| ||||||    
T  31759428 taaaaagtcaattttgcttatatttagaaacggatggagta 31759468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 344 - 388
Target Start/End: Complemental strand, 32710109 - 32710065
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtataa 388  Q
    ||||||||| ||||||  |||||||| ||||||||||||||||||    
T  32710109 ctaaaaagtgaattttacttatattttaaaacggagggagtataa 32710065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 50)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 344 - 388
Target Start/End: Original strand, 8694586 - 8694630
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtataa 388  Q
    ||||||||||||||||||||||||||| |||||||||||||||||    
T  8694586 ctaaaaagtcaattttgtttatatttagaaacggagggagtataa 8694630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 158 - 217
Target Start/End: Complemental strand, 1243062 - 1243003
Alignment:
Q  158 tatctatagataataataaagcaagctaagtattttggcaagtttgatatttgtcatctt 217  Q
    |||||||||||||||||||||||| || | |||||||| |||||||  ||||||||||||    
T  1243062 tatctatagataataataaagcaaacttaatattttggtaagtttgtcatttgtcatctt 1243003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 345 - 388
Target Start/End: Complemental strand, 4151187 - 4151144
Alignment:
Q  345 taaaaagtcaattttgtttatatttaaaaacggagggagtataa 388  Q
    |||||||||||||||| ||||||||||||||||| |||||||||    
T  4151187 taaaaagtcaattttgcttatatttaaaaacggatggagtataa 4151144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 345 - 388
Target Start/End: Original strand, 36337838 - 36337881
Alignment:
Q  345 taaaaagtcaattttgtttatatttaaaaacggagggagtataa 388  Q
    |||||||| ||||||| |||||||||||||||||||||||||||    
T  36337838 taaaaagtgaattttgcttatatttaaaaacggagggagtataa 36337881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 343 - 386
Target Start/End: Complemental strand, 40428496 - 40428453
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    |||||||||||||||||| ||||||||||||||||| |||||||    
T  40428496 tctaaaaagtcaattttgcttatatttaaaaacggaaggagtat 40428453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 344 - 387
Target Start/End: Complemental strand, 43585532 - 43585489
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtata 387  Q
    ||||||||| || |||||||||||||||||||||||||||||||    
T  43585532 ctaaaaagtaaaatttgtttatatttaaaaacggagggagtata 43585489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 386
Target Start/End: Complemental strand, 3781017 - 3780975
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    ||||||||||||||||| ||||||||||| |||||||||||||    
T  3781017 ctaaaaagtcaattttgcttatatttaaagacggagggagtat 3780975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 385
Target Start/End: Complemental strand, 8959823 - 8959781
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    |||||||||||||||||||||||||||||| ||||| ||||||    
T  8959823 tctaaaaagtcaattttgtttatatttaaagacggatggagta 8959781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 385
Target Start/End: Original strand, 21344551 - 21344593
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    |||||||||||||||||| ||||||||||| ||||||||||||    
T  21344551 tctaaaaagtcaattttgcttatatttaaagacggagggagta 21344593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 345 - 386
Target Start/End: Complemental strand, 5787515 - 5787474
Alignment:
Q  345 taaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    |||||||||||||||| ||||||||||| |||||||||||||    
T  5787515 taaaaagtcaattttgcttatatttaaagacggagggagtat 5787474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 344 - 385
Target Start/End: Original strand, 9087609 - 9087650
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    ||||||||||||||||| ||||||||||||||||| ||||||    
T  9087609 ctaaaaagtcaattttgcttatatttaaaaacggaaggagta 9087650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 344 - 385
Target Start/End: Original strand, 11380289 - 11380330
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    ||||||||||||||||| |||||||||||||| |||||||||    
T  11380289 ctaaaaagtcaattttgcttatatttaaaaaccgagggagta 11380330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 344 - 385
Target Start/End: Complemental strand, 13359198 - 13359157
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    ||||||||||||||||| ||||||| ||||||||||||||||    
T  13359198 ctaaaaagtcaattttgcttatattaaaaaacggagggagta 13359157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 344 - 385
Target Start/End: Original strand, 13461653 - 13461694
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    ||||||||||||||||| ||||||| ||||||||||||||||    
T  13461653 ctaaaaagtcaattttgcttatattaaaaaacggagggagta 13461694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 344 - 385
Target Start/End: Complemental strand, 22473975 - 22473934
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    |||||||||||||||| |||||||||||||| ||||||||||    
T  22473975 ctaaaaagtcaattttatttatatttaaaaatggagggagta 22473934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 344 - 385
Target Start/End: Original strand, 23592088 - 23592129
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    ||||||||||||||||| |||||||||||||| |||||||||    
T  23592088 ctaaaaagtcaattttgcttatatttaaaaacagagggagta 23592129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 344 - 385
Target Start/End: Original strand, 34186458 - 34186499
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    ||||||| ||||||||| ||||||||||||||||||||||||    
T  34186458 ctaaaaactcaattttgcttatatttaaaaacggagggagta 34186499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 6689953 - 6689909
Alignment:
Q  159 atctatagataataataaagcaagctaagtattttggcaagtttg 203  Q
    ||||| ||||||||||||||||| || ||||||||||||||||||    
T  6689953 atctacagataataataaagcaaacttagtattttggcaagtttg 6689909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 388
Target Start/End: Original strand, 13420537 - 13420581
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtataa 388  Q
    ||||||| |||| |||| |||||||||||||||||||||||||||    
T  13420537 ctaaaaaatcaaatttgcttatatttaaaaacggagggagtataa 13420581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 384
Target Start/End: Complemental strand, 13461587 - 13461547
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagt 384  Q
    ||||||||||||||||| ||||||||||| |||||||||||    
T  13461587 ctaaaaagtcaattttgcttatatttaaatacggagggagt 13461547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 380
Target Start/End: Original strand, 15966746 - 15966782
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagg 380  Q
    |||||||||||||||| ||||||||||||||||||||    
T  15966746 ctaaaaagtcaattttatttatatttaaaaacggagg 15966782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 386
Target Start/End: Complemental strand, 8694521 - 8694478
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    |||||||||||||||||| ||||||||| ||||||| |||||||    
T  8694521 tctaaaaagtcaattttgcttatatttagaaacggatggagtat 8694478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 387
Target Start/End: Original strand, 14550135 - 14550178
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtata 387  Q
    ||||||||| ||||||| |||||||| |||||||||||||||||    
T  14550135 ctaaaaagtgaattttgcttatattttaaaacggagggagtata 14550178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 387
Target Start/End: Complemental strand, 18753648 - 18753605
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtata 387  Q
    ||||||||||||||||| ||||||| ||| ||||||||||||||    
T  18753648 ctaaaaagtcaattttgcttatattaaaatacggagggagtata 18753605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 386
Target Start/End: Original strand, 31210362 - 31210405
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    |||||||||| || |||||||||||||||||||||| |||||||    
T  31210362 tctaaaaagtaaaatttgtttatatttaaaaacggatggagtat 31210405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 386
Target Start/End: Original strand, 34102177 - 34102220
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    ||||||| || ||||||||||||||||| |||||||||||||||    
T  34102177 tctaaaaggtaaattttgtttatatttagaaacggagggagtat 34102220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 385
Target Start/End: Original strand, 38860905 - 38860944
Alignment:
Q  346 aaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    ||||| ||||||||| ||||||||||||||||||||||||    
T  38860905 aaaaaatcaattttgcttatatttaaaaacggagggagta 38860944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 343 - 385
Target Start/End: Original strand, 5089555 - 5089597
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    |||||||| |||||||| |||||||||||||||||||| ||||    
T  5089555 tctaaaaaatcaattttatttatatttaaaaacggaggaagta 5089597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 344 - 386
Target Start/End: Complemental strand, 6638267 - 6638225
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    ||||||||| || |||| |||||||||||||||||||||||||    
T  6638267 ctaaaaagtaaaatttgcttatatttaaaaacggagggagtat 6638225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 344 - 386
Target Start/End: Complemental strand, 9012992 - 9012950
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    |||||| || ||||||||||||||||||||| |||||||||||    
T  9012992 ctaaaatgtaaattttgtttatatttaaaaatggagggagtat 9012950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 343 - 385
Target Start/End: Complemental strand, 20362015 - 20361973
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    |||||||||| || |||| ||||||||||||||||||||||||    
T  20362015 tctaaaaagtaaaatttgcttatatttaaaaacggagggagta 20361973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 345 - 387
Target Start/End: Original strand, 20502632 - 20502674
Alignment:
Q  345 taaaaagtcaattttgtttatatttaaaaacggagggagtata 387  Q
    |||||||||||||||| ||||||| ||| ||||||||||||||    
T  20502632 taaaaagtcaattttgcttatattaaaatacggagggagtata 20502674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 343 - 385
Target Start/End: Original strand, 21369375 - 21369417
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    |||||||||| ||||||| |||||||| |||||||||||||||    
T  21369375 tctaaaaagtaaattttgcttatattttaaaacggagggagta 21369417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 344 - 386
Target Start/End: Original strand, 23042065 - 23042107
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    ||||||||| ||||||| |||||||||||||||||| ||||||    
T  23042065 ctaaaaagtaaattttgcttatatttaaaaacggagagagtat 23042107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 344 - 386
Target Start/End: Complemental strand, 23117527 - 23117485
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    ||||||||||||||||  ||||||||||||||||| |||||||    
T  23117527 ctaaaaagtcaattttacttatatttaaaaacggatggagtat 23117485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 344 - 386
Target Start/End: Complemental strand, 32146864 - 32146822
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    ||||||||| ||||||| |||||||||||||||||| ||||||    
T  32146864 ctaaaaagtaaattttgcttatatttaaaaacggagagagtat 32146822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 344 - 386
Target Start/End: Original strand, 37039795 - 37039837
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    ||||||| | ||||||| |||||||||||||||||||||||||    
T  37039795 ctaaaaatttaattttgcttatatttaaaaacggagggagtat 37039837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 344 - 386
Target Start/End: Original strand, 43176354 - 43176396
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    ||||||||||||||||| ||||||| ||| |||||||||||||    
T  43176354 ctaaaaagtcaattttgcttatattaaaatacggagggagtat 43176396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 344 - 386
Target Start/End: Original strand, 43585598 - 43585640
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    ||||||||| ||||||| ||||||||||||||||| |||||||    
T  43585598 ctaaaaagtaaattttgcttatatttaaaaacggatggagtat 43585640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 385
Target Start/End: Original strand, 25600655 - 25600696
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    ||||||||| |||||||||||||||| |||||||| ||||||    
T  25600655 ctaaaaagtgaattttgtttatattttaaaacggatggagta 25600696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 372
Target Start/End: Complemental strand, 25837590 - 25837561
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaa 372  Q
    ||||||||||||||||||||||||||||||    
T  25837590 tctaaaaagtcaattttgtttatatttaaa 25837561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 386
Target Start/End: Original strand, 28907262 - 28907303
Alignment:
Q  345 taaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    |||||||| ||||||||||||||||  |||||||||||||||    
T  28907262 taaaaagtgaattttgtttatatttttaaacggagggagtat 28907303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 386
Target Start/End: Original strand, 28943657 - 28943698
Alignment:
Q  345 taaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    |||||||| ||||||||||||||||  |||||||||||||||    
T  28943657 taaaaagtgaattttgtttatatttttaaacggagggagtat 28943698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 385
Target Start/End: Original strand, 31758971 - 31759012
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    |||||||| |||||||| |||||||||||||| |||||||||    
T  31758971 ctaaaaagccaattttgcttatatttaaaaacagagggagta 31759012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #45
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 385
Target Start/End: Complemental strand, 34102112 - 34102071
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    ||||||| | ||||||| ||||||||||||||||||||||||    
T  34102112 ctaaaaaataaattttgcttatatttaaaaacggagggagta 34102071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #46
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 385
Target Start/End: Original strand, 35068022 - 35068063
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    ||||||||| || ||||||||||||||||||| |||||||||    
T  35068022 ctaaaaagtaaaatttgtttatatttaaaaacagagggagta 35068063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #47
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 343 - 387
Target Start/End: Complemental strand, 5226057 - 5226013
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggagggagtata 387  Q
    |||||||||| ||||||| ||||||||  ||||||||||||||||    
T  5226057 tctaaaaagtgaattttgcttatattttgaaacggagggagtata 5226013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #48
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 345 - 385
Target Start/End: Original strand, 35469500 - 35469540
Alignment:
Q  345 taaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    |||||||||||||||| |||||||||||||| |||| ||||    
T  35469500 taaaaagtcaattttgcttatatttaaaaaccgaggaagta 35469540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #49
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 345 - 385
Target Start/End: Original strand, 36474906 - 36474946
Alignment:
Q  345 taaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    ||||| |||||||||| ||||||||||||| ||||||||||    
T  36474906 taaaaggtcaattttgcttatatttaaaaatggagggagta 36474946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #50
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 345 - 385
Target Start/End: Original strand, 38507960 - 38508000
Alignment:
Q  345 taaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    |||||||||||||||| ||||||||||| || |||||||||    
T  38507960 taaaaagtcaattttgcttatatttaaagacagagggagta 38508000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 37)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 343 - 387
Target Start/End: Complemental strand, 29573852 - 29573808
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggagggagtata 387  Q
    |||||||||||||||||| ||||||||||||||||||||||||||    
T  29573852 tctaaaaagtcaattttgcttatatttaaaaacggagggagtata 29573808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 343 - 388
Target Start/End: Complemental strand, 6006720 - 6006675
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggagggagtataa 388  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||    
T  6006720 tctaaaaagtcaattttatttatatttaaaaacggagagagtataa 6006675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 343 - 390
Target Start/End: Complemental strand, 42230560 - 42230513
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggagggagtataatg 390  Q
    |||||||||||||||||| ||||||||||| |||||||||||| ||||    
T  42230560 tctaaaaagtcaattttgcttatatttaaagacggagggagtacaatg 42230513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 386
Target Start/End: Complemental strand, 4101985 - 4101943
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    ||||||||||||||||  |||||||||||||||||||||||||    
T  4101985 ctaaaaagtcaattttacttatatttaaaaacggagggagtat 4101943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 386
Target Start/End: Original strand, 8079447 - 8079489
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    ||||||| |||||||| ||||||||||||||||||||||||||    
T  8079447 ctaaaaaatcaattttatttatatttaaaaacggagggagtat 8079489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 386
Target Start/End: Original strand, 33363662 - 33363704
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    ||||||||||||||||| ||||||||||| |||||||||||||    
T  33363662 ctaaaaagtcaattttgcttatatttaaagacggagggagtat 33363704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 385
Target Start/End: Complemental strand, 37354918 - 37354876
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    ||||||||||||||||||||||||||||||||| || ||||||    
T  37354918 tctaaaaagtcaattttgtttatatttaaaaacagatggagta 37354876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 343 - 388
Target Start/End: Complemental strand, 12017797 - 12017752
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggagggagtataa 388  Q
    |||||||||||||||||| ||||||||||| ||||||| |||||||    
T  12017797 tctaaaaagtcaattttgcttatatttaaagacggaggtagtataa 12017752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 344 - 385
Target Start/End: Complemental strand, 35567185 - 35567144
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    ||||||| ||||||||| ||||||||||||||||||||||||    
T  35567185 ctaaaaaatcaattttgcttatatttaaaaacggagggagta 35567144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 345 - 386
Target Start/End: Original strand, 35797873 - 35797914
Alignment:
Q  345 taaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    |||||||| ||||||||||||||||||||| |||||||||||    
T  35797873 taaaaagttaattttgtttatatttaaaaatggagggagtat 35797914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 344 - 385
Target Start/End: Original strand, 40846567 - 40846608
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    ||||||||| |||||||||||||||| |||||||||||||||    
T  40846567 ctaaaaagtgaattttgtttatattttaaaacggagggagta 40846608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 345 - 386
Target Start/End: Original strand, 42230626 - 42230667
Alignment:
Q  345 taaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    |||||||||||||||| ||||||| |||||||||||||||||    
T  42230626 taaaaagtcaattttgcttatattaaaaaacggagggagtat 42230667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 345 - 386
Target Start/End: Original strand, 42755117 - 42755158
Alignment:
Q  345 taaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    |||||||| ||||||||||||||||||| |||||||||||||    
T  42755117 taaaaagttaattttgtttatatttaaagacggagggagtat 42755158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 344 - 385
Target Start/End: Complemental strand, 44949379 - 44949338
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    ||||||||||||||||| ||||||||| ||||||||||||||    
T  44949379 ctaaaaagtcaattttgcttatatttagaaacggagggagta 44949338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 346 - 386
Target Start/End: Complemental strand, 14152225 - 14152185
Alignment:
Q  346 aaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    ||||| ||||||||| |||||||||||||||||||||||||    
T  14152225 aaaaaatcaattttgcttatatttaaaaacggagggagtat 14152185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 385
Target Start/End: Original strand, 33425401 - 33425441
Alignment:
Q  345 taaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    |||||||||||||||| ||||||||||||||||| ||||||    
T  33425401 taaaaagtcaattttgcttatatttaaaaacggatggagta 33425441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 385
Target Start/End: Original strand, 6006787 - 6006826
Alignment:
Q  346 aaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    |||||||||||||| |||||||| ||||||||||||||||    
T  6006787 aaaaagtcaattttatttatattaaaaaacggagggagta 6006826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 385
Target Start/End: Original strand, 18967329 - 18967368
Alignment:
Q  346 aaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    ||||||||||||||  ||||||||||||||||||||||||    
T  18967329 aaaaagtcaattttagttatatttaaaaacggagggagta 18967368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 382
Target Start/End: Complemental strand, 40669018 - 40668979
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggaggga 382  Q
    |||||||||||||||||| |||||||||||||| ||||||    
T  40669018 tctaaaaagtcaattttgcttatatttaaaaacagaggga 40668979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 386
Target Start/End: Original strand, 40669065 - 40669108
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    |||||||||| ||||||| ||||||||| |||||||||||||||    
T  40669065 tctaaaaagtaaattttgcttatatttagaaacggagggagtat 40669108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 379
Target Start/End: Original strand, 42270086 - 42270121
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggag 379  Q
    ||||||||| ||||||||||||||||||||||||||    
T  42270086 ctaaaaagtaaattttgtttatatttaaaaacggag 42270121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 344 - 382
Target Start/End: Complemental strand, 5094877 - 5094839
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggaggga 382  Q
    ||||||||||||||||| ||||||| |||||||||||||    
T  5094877 ctaaaaagtcaattttgcttatattaaaaaacggaggga 5094839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 345 - 383
Target Start/End: Original strand, 5717976 - 5718014
Alignment:
Q  345 taaaaagtcaattttgtttatatttaaaaacggagggag 383  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  5717976 taaaaagtcaattttacttatatttaaaaacggagggag 5718014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 343 - 385
Target Start/End: Original strand, 12017854 - 12017896
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    |||||||||||||||||| ||| ||||||||||| ||||||||    
T  12017854 tctaaaaagtcaattttgcttacatttaaaaacgtagggagta 12017896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 344 - 386
Target Start/End: Original strand, 26759119 - 26759161
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    ||||||||||||||||| ||| ||||||| |||||||||||||    
T  26759119 ctaaaaagtcaattttgcttaaatttaaagacggagggagtat 26759161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 344 - 386
Target Start/End: Original strand, 30202587 - 30202629
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    ||||||||||| ||||| ||||||||| |||||||||||||||    
T  30202587 ctaaaaagtcagttttgcttatatttagaaacggagggagtat 30202629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 344 - 386
Target Start/End: Complemental strand, 33363596 - 33363554
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    |||||||||  |||||| |||||||||||||||||||||||||    
T  33363596 ctaaaaagtagattttgcttatatttaaaaacggagggagtat 33363554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 343 - 385
Target Start/End: Original strand, 35567240 - 35567282
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    |||||||| ||||||||  ||||||||||||||||||||||||    
T  35567240 tctaaaaaatcaattttacttatatttaaaaacggagggagta 35567282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 345 - 387
Target Start/End: Original strand, 38721487 - 38721528
Alignment:
Q  345 taaaaagtcaattttgtttatatttaaaaacggagggagtata 387  Q
    |||||||||||||||| |||||||| |||||||||||||||||    
T  38721487 taaaaagtcaattttgcttatattt-aaaacggagggagtata 38721528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 344 - 386
Target Start/End: Complemental strand, 45123832 - 45123790
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    ||||||||| || |||| |||||||||||||||||||||||||    
T  45123832 ctaaaaagtaaaatttgcttatatttaaaaacggagggagtat 45123790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 386
Target Start/End: Complemental strand, 4184761 - 4184720
Alignment:
Q  345 taaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    |||||||||||||||| ||||||| ||| |||||||||||||    
T  4184761 taaaaagtcaattttgcttatattaaaatacggagggagtat 4184720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 385
Target Start/End: Original strand, 20556689 - 20556730
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    ||||||| ||||||||| |||||||| |||||||||||||||    
T  20556689 ctaaaaaatcaattttgcttatatttgaaaacggagggagta 20556730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 385
Target Start/End: Original strand, 21208995 - 21209036
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    ||||||||| ||||||| |||||||| |||||||||||||||    
T  21208995 ctaaaaagtgaattttgcttatattttaaaacggagggagta 21209036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 385
Target Start/End: Complemental strand, 33052179 - 33052138
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    ||||||| ||||||||| ||||||| ||||||||||||||||    
T  33052179 ctaaaaaatcaattttgcttatattaaaaaacggagggagta 33052138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 344 - 388
Target Start/End: Original strand, 6048065 - 6048109
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagtataa 388  Q
    ||||||||| ||||||| ||||||||  |||||||||||||||||    
T  6048065 ctaaaaagtgaattttgcttatattttgaaacggagggagtataa 6048109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 345 - 385
Target Start/End: Original strand, 19267936 - 19267976
Alignment:
Q  345 taaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    |||||||||||||||| ||||||||| |||| |||||||||    
T  19267936 taaaaagtcaattttgcttatatttagaaacagagggagta 19267976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 345 - 385
Target Start/End: Complemental strand, 38962477 - 38962437
Alignment:
Q  345 taaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    |||||||| ||||||| |||||||| |||||||||||||||    
T  38962477 taaaaagtgaattttgcttatattttaaaacggagggagta 38962437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 343 - 386
Target Start/End: Complemental strand, 8317 - 8274
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    |||||||||||||||||| ||||||||||||||||| |||||||    
T  8317 tctaaaaagtcaattttgcttatatttaaaaacggaaggagtat 8274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 386
Target Start/End: Complemental strand, 49701 - 49658
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    |||||||||||||||||| ||||||||| |||| ||||||||||    
T  49701 tctaaaaagtcaattttgcttatatttagaaacagagggagtat 49658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 348 - 385
Target Start/End: Complemental strand, 22477 - 22440
Alignment:
Q  348 aaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  22477 aaagtcaattttgcttatatttaaaaacggagggagta 22440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 385
Target Start/End: Original strand, 22547 - 22588
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    ||||||||||||||||| |||||||||||||  |||||||||    
T  22547 ctaaaaagtcaattttgcttatatttaaaaatagagggagta 22588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 344 - 385
Target Start/End: Original strand, 17537 - 17578
Alignment:
Q  344 ctaaaaagtcaattttgtttatatttaaaaacggagggagta 385  Q
    ||||||||||||||||| |||||||||||||||||| |||||    
T  17537 ctaaaaagtcaattttgcttatatttaaaaacggagagagta 17578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0280 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 346 - 386
Target Start/End: Complemental strand, 13572 - 13532
Alignment:
Q  346 aaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    ||||||||||||||| |||||||||||||||||| ||||||    
T  13572 aaaaagtcaattttgcttatatttaaaaacggagagagtat 13532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 386
Target Start/End: Complemental strand, 65958 - 65915
Alignment:
Q  343 tctaaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    |||||||||| ||||||| ||||||||||| |||||||||||||    
T  65958 tctaaaaagtaaattttgcttatatttaaatacggagggagtat 65915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 346 - 386
Target Start/End: Original strand, 25008 - 25048
Alignment:
Q  346 aaaaagtcaattttgtttatatttaaaaacggagggagtat 386  Q
    |||| |||||||||| ||||||||||||| |||||||||||    
T  25008 aaaaggtcaattttgcttatatttaaaaatggagggagtat 25048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University