View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16020_low_15 (Length: 531)
Name: NF16020_low_15
Description: NF16020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16020_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 17 - 512
Target Start/End: Complemental strand, 8277830 - 8277335
Alignment:
| Q |
17 |
aaggtaaggtgtcagttcatcgacgaaaatggtcgttttagcagttaaattgtaagcaatgttttaaaaatcaaaccggcatcaggtcaaggttcaacta |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
8277830 |
aaggtaaggtgtcagttcatcgacgaaaatggtcgttttagcagttaaattgtaagcaatgttttaaaaatcaaaccggcatcaggtcaatgttcaacta |
8277731 |
T |
|
| Q |
117 |
cttaaaatcagaacaaaatcacgattgaaccgctaaaataacctaagtgaagaaagtgtggttcacggttcaaccaattgaacttttcgattaaattttt |
216 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8277730 |
cttaaaatcagaacaaaatcacgattgaacagctaaaataacctaagtgaagaaagtgtggttcacggttcaaccaattgaacttttcgattaaattttt |
8277631 |
T |
|
| Q |
217 |
aaaacattggtttgtaaggtatagtttagttacctaagacagcacttgttcttctcatcttcttcccaactggcagctatacaatcagaatcggctttca |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8277630 |
aaaacattggtttgtaaggtatagtttagttacctaagacagcacttgttcttctcatcttcttcccaactggcagctatacaatcagaatcggctttca |
8277531 |
T |
|
| Q |
317 |
aactagcattatgtctcaaacttttcgatatttccttttcctcctcttcacttgagctccaatttggtgcaaccaaatcatactttgtcgttccaaattg |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8277530 |
aactagcattatgtctcaaacttttcgatatttccttttcctcctcttcacttgagctccaatttggtgcaaccaaatcatactttgtcgttccaaattg |
8277431 |
T |
|
| Q |
417 |
cagtttagaaaaatgacactcttctagctgaatagcatcaacactgcatccattgctgtcaatgttagataatgccaatggtcctgacctactagc |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8277430 |
cagtttagaaaaatgacactcttctagctgaatagcatcaacactgcatccattgctgtcaatgttagataatgccaatggtcctgacctactagc |
8277335 |
T |
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