View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16020_low_17 (Length: 520)
Name: NF16020_low_17
Description: NF16020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16020_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 12 - 504
Target Start/End: Original strand, 46972886 - 46973376
Alignment:
| Q |
12 |
gaaaggaaggctaaaaaagacggaaaaccgaaattacccttgattgatttagtaacgnnnnnnnttcagttggtccaattcaggagggaaagggaaaact |
111 |
Q |
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| T |
46972886 |
gaaaggaaggctaaaaaagacggaaaaccgaaattacccttgattgatttagtaacgaaaaaaattcagttggtccaattcaggagggaaagggaaaact |
46972985 |
T |
|
| Q |
112 |
caacttagcaccaaatcagacaaaattcatcaacagagcgtaagcgaagaacacgcttcgtcgcgtcacaaatctcattctcgaatcttcattctcattt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46972986 |
caacttagcaccaaatcagacaaaattcatcaacagtg--taagcgaagaacacgcttcgtcgcgtcacaaatctcattctcgaatcttcattctcattt |
46973083 |
T |
|
| Q |
212 |
catccattcgcattttatcaattcgaatctcctatcgttcttcttttccccatttcaacggaaaaattttccgtcgtcgttttacgattctctacctata |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46973084 |
catccattcgcattttatcaattcgaatctcctatcgttcttcttttccccatttcaacggaaaaattttccgtcgtcgttttacgattctctacctata |
46973183 |
T |
|
| Q |
312 |
cattgccatgagaagcgaaagcttcaatcacgttcactttcagggtttcgagcacggattgggttctataaatggatttttgttgctccacactacaatg |
411 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
46973184 |
cattgccatgagaagcgaaagcttcaaccacgttcactttcagggtttcgagcacggattgggttctataaatggatttgtgttgctccacactacaatg |
46973283 |
T |
|
| Q |
412 |
tagctaccgattctagtttttcatatgaaatagcgattatacttacatcatggttaggtttacacctggattcgtactccctgtgctcctcct |
504 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46973284 |
tagctaccgattctagtttttcatatgaaatagcgattatacttacatcatggttaggtttacacctggattcgtactccctgtgctcctcct |
46973376 |
T |
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