View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16020_low_18 (Length: 510)
Name: NF16020_low_18
Description: NF16020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16020_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 1 - 500
Target Start/End: Complemental strand, 47422746 - 47422247
Alignment:
| Q |
1 |
tatgagtgccaacacttcatctcttggccaccttctcctatcctctaatttctccattattgtaggcacaacaagggtagaagtggaatttgagtactct |
100 |
Q |
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| T |
47422746 |
tatgagtgccaacacttcatctcttggccaccttctcctatcctctaatttctccattattgtaggcacaacaagggtagaagtggaatttgagtactct |
47422647 |
T |
|
| Q |
101 |
gtgtcacttgagctagggttttgatctgctatcacattagaaaaaggtgtttttgattctagattgttagaaggattactagggttttgtgggtgcaatt |
200 |
Q |
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| T |
47422646 |
gtgtcacttgagctagggttttgatctgctatcacattagaaaaaggtgtttttgattctagattgttagaaggattattagggttttgtgggtgcaatt |
47422547 |
T |
|
| Q |
201 |
gtgtagaagaagaagaagaatatcccgtggctagatatttgttcaagaattcaatgatgttggcttgtctatcacttgcaatagcttgttgttcttgtac |
300 |
Q |
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| T |
47422546 |
gtgtagaagaagaagaagaatatcctgtggctagatatttgttcaagaattcaatgatgttggcttgtctatcacttgcaatagcttgttgttcttgtac |
47422447 |
T |
|
| Q |
301 |
catcatgttcatcctttcaatctcttgttttttccatgtttcctctctatcaagcttttcttgatctcttttgagcatgtcttcaagtagcttattgtgt |
400 |
Q |
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| T |
47422446 |
catcatgttcatcctttcaatctcttgttttttccatgtttcctctctatcaagcttttcttgatctcttttgagcatgtcttcaagtagcttattgtgt |
47422347 |
T |
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| Q |
401 |
atttcttcttgttgtgctattattttgttaaccactgtctcacaaaaactcttcaacatttcaaatctatcacggcgcctcttcctctttttgtcctttg |
500 |
Q |
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| T |
47422346 |
atttcttcttgttgtgctattattttattaaccactgtctcacaaaaactcttcaacatttcaaatctatcacggcgcctcttcctctttttgttctttg |
47422247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 320 - 472
Target Start/End: Original strand, 36127974 - 36128126
Alignment:
| Q |
320 |
atctcttgttttttccatgtttcctctctatcaagcttttcttgatctcttttgagcatgtcttcaagtagcttattgtgtatttcttcttgttgtgcta |
419 |
Q |
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| T |
36127974 |
atctcttgtttcttccaagcttcttctctactaaacttctcttcatctcttttaaccatatcttcaataagcttgttgtgcatttcttcttgttgatcca |
36128073 |
T |
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| Q |
420 |
ttattttgttaaccactgtctcacaaaaactcttcaacatttcaaatctatca |
472 |
Q |
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| T |
36128074 |
tcattttctttacaacactctcacaaaaacccttaaacacttcaaatctatca |
36128126 |
T |
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