View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16020_low_19 (Length: 503)
Name: NF16020_low_19
Description: NF16020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16020_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 459; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 1 - 493
Target Start/End: Complemental strand, 45549348 - 45548859
Alignment:
| Q |
1 |
taaataaagctggtaatcagtccaatgatactgaccatttcttttaaacttagaggcaacgaggtttgaacctagaaactcatgcatactacctaaacca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
45549348 |
taaataaagctggtaatcagtccaatgatacttaccatttcttttaaacttagaggcgacgaggtttgaacctagaaactcatgcatactacctaaacca |
45549249 |
T |
|
| Q |
101 |
ctcaccattagaccaaacacagcggcatgcaatggtatttaacttagagatgtaagtatagtcaaattaaaatagaataaatggaataatacaagacaat |
200 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45549248 |
ctcaccattagaccaaacatagcggcatgcaatggtatttaacttagagatgtaagtatagtcaaattaaaatagaataaatggaataatacaagacaat |
45549149 |
T |
|
| Q |
201 |
ttactcttccattttttggtataagaagataaaatgtgaaatttactcttgctaagatccccggaccctaacaatttatttacacagataataatttcat |
300 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45549148 |
ttactcttccattttttggtataaga---taaaatgtgaaatttactcttgctaagatccccggaccctaacaatttatttacacagataataatttcat |
45549052 |
T |
|
| Q |
301 |
gtatgttggtttacaggaagtggtgaaataaaagaaacaacagcacttgaggaatctctagagagaatgaatgtgcatgatgagccaaaacctaccacag |
400 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45549051 |
gtatgttggtttacaggaagtggtgaagtaaaagaaacaacagcacttgaggaatctctagagagaatgaatgtgcatgatgagccaaaacctaccacag |
45548952 |
T |
|
| Q |
401 |
aaccaaaaatccagccacctgtcgctgacagtactgaataccctccttcttctggaagccgtgatattgatcagtttgtgccacacctctctg |
493 |
Q |
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| T |
45548951 |
aaccaaaaatccagccacctgttgctgacagtactgaataccctccttcttctggaagccgtgatattgatcagtttgtgccacacctctctg |
45548859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 305 - 414
Target Start/End: Complemental strand, 45545171 - 45545062
Alignment:
| Q |
305 |
gttggtttacaggaagtggtgaaataaaagaaacaacagcacttgaggaatctctagagagaatgaatgtgcatgatgagccaaaacctaccacagaacc |
404 |
Q |
| |
|
||||| |||||||||||| |||||||||||| | |||| |||| ||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
45545171 |
gttggcttacaggaagtgatgaaataaaagacataacaccactcgaggaatctcttgagagaatgaatgtgcatgacgagtcaaaacctaccacagaacc |
45545072 |
T |
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| Q |
405 |
aaaaatccag |
414 |
Q |
| |
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|||||||||| |
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| T |
45545071 |
aaaaatccag |
45545062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 289 - 414
Target Start/End: Complemental strand, 45550358 - 45550233
Alignment:
| Q |
289 |
taataatttcatgtatgttggtttacaggaagtggtgaaataaaagaaacaacagcacttgaggaatctctagagagaatgaatgtgcatgatgagccaa |
388 |
Q |
| |
|
||||| |||||||| |||||| || ||| ||||| |||||||||||| | ||| |||| ||||||||||| |||||||||||||||||||||||| ||| |
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| T |
45550358 |
taatactttcatgtgtgttggcttccagaaagtgatgaaataaaagacattacaccactcgaggaatctctcgagagaatgaatgtgcatgatgagtcaa |
45550259 |
T |
|
| Q |
389 |
aacctaccacagaaccaaaaatccag |
414 |
Q |
| |
|
|||||||||||||||||||||||||| |
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|
| T |
45550258 |
aacctaccacagaaccaaaaatccag |
45550233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 344 - 493
Target Start/End: Complemental strand, 45549926 - 45549783
Alignment:
| Q |
344 |
cacttgaggaatctctagagagaatgaatgtgcatg---atgagccaaaacctaccacagaaccaaaaatccagccacctgtcgctgacagtactgaata |
440 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||| |||| ||||| |||||||| |
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| T |
45549926 |
cacttgaggaatctcttgagagaatgaatgtgcatgatgatgagccaaaacctaccacagaacgaaatatccagccatctgttactgac---actgaata |
45549830 |
T |
|
| Q |
441 |
ccctccttcttctggaagccgtgatattgatcagtttgtgccacacctctctg |
493 |
Q |
| |
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||||||| || |||||||| ||||||||||||||||||| |||||| |
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| T |
45549829 |
ccctcctgctgttggaagcc------atgatcagtttgtgccacacttctctg |
45549783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 11 - 119
Target Start/End: Complemental strand, 45545405 - 45545299
Alignment:
| Q |
11 |
tggtaatcagtccaatgatactgaccatttcttttaaacttagaggcaacgaggtttgaacctagaaactcatgcatactacctaaaccactcaccatta |
110 |
Q |
| |
|
||||||||||| ||||| || | ||||||| || | |||||||||||| ||||||||||||||| |||| | ||||| |||||||||||||||||||| |
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| T |
45545405 |
tggtaatcagtacaatggtatttaccattt--ttaacacttagaggcaatgaggtttgaacctaggaacttgtccataccacctaaaccactcaccatta |
45545308 |
T |
|
| Q |
111 |
gaccaaaca |
119 |
Q |
| |
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||||||||| |
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|
| T |
45545307 |
gaccaaaca |
45545299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 295 - 417
Target Start/End: Complemental strand, 45544281 - 45544156
Alignment:
| Q |
295 |
tttcatgtatgttggtttacaggaagtggtgaaataaaagaaacaacagcacttgaggaatctctagagagaatgaatgtgcatg---atgagccaaaac |
391 |
Q |
| |
|
|||||||| |||||| |||||| |||| ||||| |||||| | ||| | |||||||||||||| ||||||||||||||||||| |||| ||||| | |
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|
| T |
45544281 |
tttcatgtgtgttggcttacagaaagtaatgaaacaaaagacattacaccgcttgaggaatctcttgagagaatgaatgtgcatgatgatgaaccaaatc |
45544182 |
T |
|
| Q |
392 |
ctaccacagaaccaaaaatccagcca |
417 |
Q |
| |
|
||||||| ||| |||||||||||||| |
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| T |
45544181 |
ctaccactgaaacaaaaatccagcca |
45544156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 107
Target Start/End: Complemental strand, 1697576 - 1697522
Alignment:
| Q |
53 |
gaggcaacgaggtttgaacctagaaactcatgcatactacctaaaccactcacca |
107 |
Q |
| |
|
|||||||| |||||||||||||||| ||| ||||||||||| ||||| ||||||| |
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|
| T |
1697576 |
gaggcaacaaggtttgaacctagaacctcgtgcatactacccaaacccctcacca |
1697522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 361 - 413
Target Start/End: Original strand, 19671100 - 19671152
Alignment:
| Q |
361 |
gagagaatgaatgtgcatgatgagccaaaacctaccacagaaccaaaaatcca |
413 |
Q |
| |
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|||| ||||||||||||||||||||| ||||| || ||||||||||||||||| |
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|
| T |
19671100 |
gagataatgaatgtgcatgatgagcctaaaccaacaacagaaccaaaaatcca |
19671152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 367 - 409
Target Start/End: Original strand, 36610142 - 36610184
Alignment:
| Q |
367 |
atgaatgtgcatgatgagccaaaacctaccacagaaccaaaaa |
409 |
Q |
| |
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|||||||||||||||||||| |||||||| ||| ||||||||| |
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|
| T |
36610142 |
atgaatgtgcatgatgagcctaaacctacaacataaccaaaaa |
36610184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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