View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16020_low_23 (Length: 494)
Name: NF16020_low_23
Description: NF16020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16020_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 9 - 485
Target Start/End: Complemental strand, 41906966 - 41906493
Alignment:
| Q |
9 |
aaaagattagtataattatactaatatacattgaactatcagtttcattgaaaagattagtataatgaatgaattcaacagttgaaaattaagcgcagcc |
108 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
41906966 |
aaaatattagtataattatactaatatacattgaactatcagtttcattgaaaagattagtataataaatgaattcaacagttgaaaattaagcgcagcc |
41906867 |
T |
|
| Q |
109 |
agacttttctcaagtcaaagtaagccctactgaaacaaattttgatggaactttctttccattttctcaggagtgctacagtactgataactaattttgc |
208 |
Q |
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| T |
41906866 |
agacttttctcaagtcaaagtaagccctactgaaacaaattttgatggaactttctttccattttctcaggagtgctacagtactgataactaattttgc |
41906767 |
T |
|
| Q |
209 |
agcatttactattctattctataagaagtaaattcaactttttgcatcatctcatataagcttgcaatataataacgattttcacgtctccaagagctta |
308 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41906766 |
agcatttactattctattctataag---taaattcaactttttgcaccatctcatataagcttgcaatataataacgattttcacgtctccaagagctta |
41906670 |
T |
|
| Q |
309 |
taaatctgaaatattttcgttcatacacttaccacaaggtcatatcttttgttcatattccatcagccaagataaaggacacaaactatctttcagtcag |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41906669 |
taaatctgaaatattttcgttcatacacttaccacaaggtcatatcttttgttcatattccatcagccaagataaaggacacaaactatctttcagtcag |
41906570 |
T |
|
| Q |
409 |
gtttggcttctattttgatgtctcttttcaataaccatgtttgtgttaagttacatattacttactttctgcgcctt |
485 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41906569 |
gtttggcttctattttgatgtctcttttcaataaccatgtttgtgttaagttacatattacttactttctgcgcctt |
41906493 |
T |
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