View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16020_low_29 (Length: 437)
Name: NF16020_low_29
Description: NF16020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16020_low_29 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 7 - 422
Target Start/End: Complemental strand, 51070306 - 51069887
Alignment:
| Q |
7 |
agattattctcatatcatcatatattttaatttgtttgtaatggaaacaacaaaaatagttgaagaagaagatgttgtgattgtgggagctggaattgct |
106 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51070306 |
agattactctcatatcatcatatattttaatttgtttgtaatggaaacaacaaaaatatttgaagaagaagatgttgtgattgtgggagctggaattgct |
51070207 |
T |
|
| Q |
107 |
ggccttgctactgccttaggacttcacaggtaccaattctattctcttcattatagtgatgtatgtg----tgcatacatattcattgttatcgttggca |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
51070206 |
ggccttgctactgccttaggacttcacaggtaccaattctattctcttcattatagtgatgtatgtgcgcatgcatacatattcattgttatcgttggca |
51070107 |
T |
|
| Q |
203 |
ggttaggtgtaagaagtttggtattggaatcttcagatagtttgagagtaactggatttgctttaggaatatgggaaaatgcttggaaagccttggatgc |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51070106 |
ggttaggtgtaagaagtttggtattggaatcttcagatagtttgagagtaactggatttgctttaggaatatgggaaaatgcttggaaagccttggatgc |
51070007 |
T |
|
| Q |
303 |
tgttggtgttggagatatcctccgccacaaacatatacatctttatgggtattttgcacattaccaacttaatgtttttgatattatnnnnnnnngtaaa |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
51070006 |
tgttggtgttggagatatcctccgccacaaacatatacatctttatgggtattttgcacattaccaacttaatgtttttgatattataaaaaaaagtaaa |
51069907 |
T |
|
| Q |
403 |
tcagcttaagtacttgaatt |
422 |
Q |
| |
|
||| |||||||||||||||| |
|
|
| T |
51069906 |
tcaacttaagtacttgaatt |
51069887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 200 - 336
Target Start/End: Complemental strand, 51033425 - 51033289
Alignment:
| Q |
200 |
gcaggttaggtgtaagaagtttggtattggaatcttcagatagtttgagagtaactggatttgctttaggaatatgggaaaatgcttggaaagccttgga |
299 |
Q |
| |
|
|||| ||||| || |||||||||||||| |||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||| | |||||| |
|
|
| T |
51033425 |
gcagattaggcgttagaagtttggtattagaatcttccgatagtttgagagtaagcggatttgctttaacaatatgggaaaatgcttggaaggtcttgga |
51033326 |
T |
|
| Q |
300 |
tgctgttggtgttggagatatcctccgccacaaacat |
336 |
Q |
| |
|
|| |||||| || ||||||||||| |||||| ||||| |
|
|
| T |
51033325 |
tgttgttggcgtaggagatatccttcgccaccaacat |
51033289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 215 - 353
Target Start/End: Complemental strand, 51036677 - 51036539
Alignment:
| Q |
215 |
gaagtttggtattggaatcttcagatagtttgagagtaactggatttgctttaggaatatgggaaaatgcttggaaagccttggatgctgttggtgttgg |
314 |
Q |
| |
|
|||| ||| |||| |||||||| ||| |||||||||| | ||||||||||||| ||||||| ||||||||||||| || ||||||| |||||||||||| |
|
|
| T |
51036677 |
gaagcttgatattagaatcttcggatggtttgagagtgagtggatttgctttaataatatggaaaaatgcttggaaggcattggatgttgttggtgttgg |
51036578 |
T |
|
| Q |
315 |
agatatcctccgccacaaacatatacatctttatgggta |
353 |
Q |
| |
|
||| ||||| || ||||||||| |||| ||||||||||| |
|
|
| T |
51036577 |
agacatccttcgtcacaaacatctacaactttatgggta |
51036539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 216 - 341
Target Start/End: Original strand, 40612631 - 40612756
Alignment:
| Q |
216 |
aagtttggtattggaatcttcagatagtttgagagtaactggatttgctttaggaatatgggaaaatgcttggaaagccttggatgctgttggtgttgga |
315 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||| |||||||||| ||| ||||||||| |
|
|
| T |
40612631 |
aagtttggtattagaatcttcagatagtttgcgagtcggtggatttgctttaacgttatgggaaaatgcttggaaggccttggatgttgtaggtgttgga |
40612730 |
T |
|
| Q |
316 |
gatatcctccgccacaaacatataca |
341 |
Q |
| |
|
|||||||||||||| ||||| |||| |
|
|
| T |
40612731 |
aatatcctccgccaccaacatctaca |
40612756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 216 - 353
Target Start/End: Complemental strand, 51066949 - 51066812
Alignment:
| Q |
216 |
aagtttggtattggaatcttcagatagtttgagagtaactggatttgctttaggaatatgggaaaatgcttggaaagccttggatgctgttggtgttgga |
315 |
Q |
| |
|
|||||||||||| |||||||| ||||| |||||||| ||||||||||||| ||||||||||||||||||| || ||||||| ||||||||||||| |
|
|
| T |
51066949 |
aagtttggtattagaatcttctgatagcttgagagttggtggatttgctttaacggtatgggaaaatgcttggaaggcgttggatgttgttggtgttgga |
51066850 |
T |
|
| Q |
316 |
gatatcctccgccacaaacatatacatctttatgggta |
353 |
Q |
| |
|
|||||||||||| ||||| |||| ||| ||||||| |
|
|
| T |
51066849 |
accatcctccgccaccaacatctacaacttcatgggta |
51066812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 111
Target Start/End: Original strand, 40611750 - 40611790
Alignment:
| Q |
71 |
gaagaagatgttgtgattgtgggagctggaattgctggcct |
111 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
40611750 |
gaagaagatattgtgattgtgggagctggaattgctggcct |
40611790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 138
Target Start/End: Complemental strand, 51036967 - 51036900
Alignment:
| Q |
71 |
gaagaagatgttgtgattgtgggagctggaattgctggccttgctactgccttaggacttcacaggta |
138 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| || | || ||||||||||| ||||||| |
|
|
| T |
51036967 |
gaagaagatattgtgattgtgggagctggaattgctggactcacaacatccttaggactttacaggta |
51036900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 71 - 108
Target Start/End: Complemental strand, 51033559 - 51033522
Alignment:
| Q |
71 |
gaagaagatgttgtgattgtgggagctggaattgctgg |
108 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
51033559 |
gaagaagatattgtgattgtgggagctggaattgctgg |
51033522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 139
Target Start/End: Complemental strand, 51067607 - 51067543
Alignment:
| Q |
75 |
aagatgttgtgattgtgggagctggaattgctggccttgctactgccttaggacttcacaggtac |
139 |
Q |
| |
|
||||| ||||||| || |||||||||||||||||||| | || |||| ||||||||||||||| |
|
|
| T |
51067607 |
aagatattgtgatcgtaggagctggaattgctggcctcacaacatccttgggacttcacaggtac |
51067543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University