View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16020_low_30 (Length: 436)
Name: NF16020_low_30
Description: NF16020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16020_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Complemental strand, 43756810 - 43756407
Alignment:
| Q |
1 |
attcatccatagagcggagtccatatctatatctaaatctatatgagctaatggtacaaaattgtcaaattgagtatggatatctagcactagcatttac |
100 |
Q |
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| T |
43756810 |
attcatccatagagctgagtccatatctatatctaaatctatatgagctaatggtacaaaattgtcaaattgagtatggatatctagcactagcatttac |
43756711 |
T |
|
| Q |
101 |
atgtggcattgtatcattgaaatcaataaccatgtaatgctaaatggtgcaaaattttgagaatggatatgctagcatttacttgtggctttgtacattg |
200 |
Q |
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| T |
43756710 |
atgtggcattgtatcattgaaatcaataaccatgtaatgctaaatggtgcaaaattttgagaatggatatgctagcatttacttgtggctttgtacattg |
43756611 |
T |
|
| Q |
201 |
aaattaacaatggtgtactgtttatcaaccttagttcttatttgaaaaccgatagccccatacactttcttgcatttcgtgcatgtagttatcaannnnn |
300 |
Q |
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| T |
43756610 |
aaattaacaatggtgtattgtttatcaaccttagttcttatttgaaaaccgattaccccatacactttcttgcatttcgtgcgtgtagttatcaa-tttt |
43756512 |
T |
|
| Q |
301 |
nnnnggtgatagtacaaaacaatttaagagagcatttcatacaaacattctagacctgtagnnnnnnncaaatagagttcattgcttaggtttattttca |
400 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
43756511 |
ttttggtgatagtacaatacaatttaagagagcatttcatacaaacattctagacctgtagtttttttcaaatagagttcgttgcttaggtttattttca |
43756412 |
T |
|
| Q |
401 |
aatgt |
405 |
Q |
| |
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||||| |
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| T |
43756411 |
aatgt |
43756407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 436
Target Start/End: Complemental strand, 31766119 - 31766086
Alignment:
| Q |
403 |
tgttcttcagtctcttcatcttcatcaacttttt |
436 |
Q |
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||||||||| |||||||||||||||||||||||| |
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| T |
31766119 |
tgttcttcaatctcttcatcttcatcaacttttt |
31766086 |
T |
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