View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16020_low_32 (Length: 429)

Name: NF16020_low_32
Description: NF16020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16020_low_32
NF16020_low_32
[»] chr2 (5 HSPs)
chr2 (12-410)||(2340986-2341384)
chr2 (289-363)||(2349074-2349148)
chr2 (213-271)||(2349016-2349074)
chr2 (364-402)||(5900542-5900580)
chr2 (364-404)||(43633452-43633492)
[»] chr4 (3 HSPs)
chr4 (364-404)||(36790850-36790890)
chr4 (364-402)||(49588203-49588241)
chr4 (364-404)||(17889437-17889477)
[»] chr5 (1 HSPs)
chr5 (364-404)||(3467671-3467711)
[»] chr3 (1 HSPs)
chr3 (364-404)||(21884105-21884145)
[»] chr1 (1 HSPs)
chr1 (364-404)||(43014375-43014415)


Alignment Details
Target: chr2 (Bit Score: 366; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 12 - 410
Target Start/End: Original strand, 2340986 - 2341384
Alignment:
Q  12 atgaatgaaattaattgctataaaaatcaaatccaaccaaagtcatgacattttgttatgatggacgttactttgcatgaaaatcatcgtattttcataa 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2340986 atgaatgaaattaattgctataaaaatcaaatccaaccaaagtcatgacattttgttatgatggacgttactttgcatgaaaatcatcgtattttcataa 2341085  T
Q  112 atgcctaatacacggaaaagttggaaattatttttattaacagatgctgtgannnnnnnatatatactagcagctgctgtgatttatgtatatgtatatc 211  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  2341086 atgcctaatacacagaaaagttggaaattatttttattaacagatgctgtgatttttttatatatactagcagctgctgtgatttatgtatatgtatatc 2341185  T
Q  212 ttgtaggaatatttgtccatagtatggatagatttgaagatgtcagtgagcatcaagtgtcaaaggtcgagaggtcatgcactataccgttgcttcaaga 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2341186 ttgtaggaatatttgtccatagtatggatagatttgaagatgtcagtgagcatcaagtgtcaaaggtcgagaggtcatgcactataccgttgcttcaaga 2341285  T
Q  312 gaagaccggagaaacatcactatctcctgcacaatctgaagaatattgatttttcttttgtaaaaggcgaaagaatagttggctttgtgctcactacat 410  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  2341286 gaagaccggagaaacatcattatctcctgcacaatctgaagaatattgatttttcttttgtaaaaggcgaaagaatagttcgctttgtgctcactacat 2341384  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 289 - 363
Target Start/End: Original strand, 2349074 - 2349148
Alignment:
Q  289 tgcactataccgttgcttcaagagaagaccggagaaacatcactatctcctgcacaatctgaagaatattgattt 363  Q
    |||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||| |||||| |||||||    
T  2349074 tgcactataccgttacttcaagagaagaccggagaaacatcaatatctcatgcacaatctcaagaatgttgattt 2349148  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 271
Target Start/End: Original strand, 2349016 - 2349074
Alignment:
Q  213 tgtaggaatatttgtccatagtatggatagatttgaagatgtcagtgagcatcaagtgt 271  Q
    ||||||||||||||| |||||  |||||||||||||||| | |||||| || |||||||    
T  2349016 tgtaggaatatttgtgcatagcgtggatagatttgaagacgacagtgaacaacaagtgt 2349074  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 402
Target Start/End: Complemental strand, 5900580 - 5900542
Alignment:
Q  364 ttcttttgtaaaaggcgaaagaatagttggctttgtgct 402  Q
    |||||| ||||||||||||||||||||| ||||||||||    
T  5900580 ttctttagtaaaaggcgaaagaatagttcgctttgtgct 5900542  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 404
Target Start/End: Original strand, 43633452 - 43633492
Alignment:
Q  364 ttcttttgtaaaaggcgaaagaatagttggctttgtgctca 404  Q
    |||||| |||||||||||||||||||||  |||||||||||    
T  43633452 ttctttagtaaaaggcgaaagaatagttcactttgtgctca 43633492  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 364 - 404
Target Start/End: Complemental strand, 36790890 - 36790850
Alignment:
Q  364 ttcttttgtaaaaggcgaaagaatagttggctttgtgctca 404  Q
    |||||| ||||||||||||||||||||| ||||||||||||    
T  36790890 ttctttagtaaaaggcgaaagaatagttcgctttgtgctca 36790850  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 402
Target Start/End: Original strand, 49588203 - 49588241
Alignment:
Q  364 ttcttttgtaaaaggcgaaagaatagttggctttgtgct 402  Q
    |||||| ||||||||||||||||||||| ||||||||||    
T  49588203 ttctttagtaaaaggcgaaagaatagttcgctttgtgct 49588241  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 404
Target Start/End: Complemental strand, 17889477 - 17889437
Alignment:
Q  364 ttcttttgtaaaaggcgaaagaatagttggctttgtgctca 404  Q
    |||||| ||||||||||||||||||||| ||| ||||||||    
T  17889477 ttctttagtaaaaggcgaaagaatagttcgctatgtgctca 17889437  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 404
Target Start/End: Original strand, 3467671 - 3467711
Alignment:
Q  364 ttcttttgtaaaaggcgaaagaatagttggctttgtgctca 404  Q
    |||||| ||||||||||||||||||||| |||||| |||||    
T  3467671 ttctttagtaaaaggcgaaagaatagtttgctttgagctca 3467711  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 404
Target Start/End: Original strand, 21884105 - 21884145
Alignment:
Q  364 ttcttttgtaaaaggcgaaagaatagttggctttgtgctca 404  Q
    |||||| ||||||||||||||||||||| ||| ||||||||    
T  21884105 ttctttagtaaaaggcgaaagaatagttcgctatgtgctca 21884145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 404
Target Start/End: Original strand, 43014375 - 43014415
Alignment:
Q  364 ttcttttgtaaaaggcgaaagaatagttggctttgtgctca 404  Q
    |||||| ||||||||||||||||||||| ||| ||||||||    
T  43014375 ttctttagtaaaaggcgaaagaatagttcgctatgtgctca 43014415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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