View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16020_low_34 (Length: 422)
Name: NF16020_low_34
Description: NF16020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16020_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 12 - 414
Target Start/End: Complemental strand, 17397297 - 17396894
Alignment:
| Q |
12 |
atcatcagggactaatagacgatgttgctggaatcctaggcctaatgaccattggagtcactctagatgtgttaacaatcatgttacttactgaaatcgt |
111 |
Q |
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| T |
17397297 |
atcatcagggactcatagacgatgttgcaggaatcctaggcctaatgaccatcggagtcgctctagatgtgttaacaatcatgttacttactgaaatcgt |
17397198 |
T |
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| Q |
112 |
acatgggaaaccaatgcttgattgacggaatcaaattcgtgactggatgaatgtatttgtttcaaagttgtgtgtagaagagaaatacttgtttgccaag |
211 |
Q |
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| T |
17397197 |
acatgggaaaccaatgcttgattgacggaatcaaattcgtgactggatgaatgtatttgtttcaaagtcgtgtgtagaagagaagtacttgtttgccaag |
17397098 |
T |
|
| Q |
212 |
agaagtagttgtttgtgaggtaggggcagctgtcagtaacctgaaactaaactaaattaataataattttctttac-nnnnnnnnnnctccattattttc |
310 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||| |
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| T |
17397097 |
agaagtagttgtttgtgaggtagaggcagctgtcagtaacctgaaactaaaccaaattaataataattttctttactttttttttctcttcattattttc |
17396998 |
T |
|
| Q |
311 |
gatcaatnnnnnnngcgaaaagtgaagttgtcatagaagttatcatcaattgctgtatatgtcattactctattgttacaagacataaaggctttatgtg |
410 |
Q |
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||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
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| T |
17396997 |
gatcaataaaaaaagagaaaagtgaagttgtcataaaagttatcatcaattgctgtatatgtcattactctattgttacaagacataaaggctttgtttg |
17396898 |
T |
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| Q |
411 |
acaa |
414 |
Q |
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|||| |
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| T |
17396897 |
acaa |
17396894 |
T |
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