View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16020_low_38 (Length: 401)
Name: NF16020_low_38
Description: NF16020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16020_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 10 - 393
Target Start/End: Original strand, 48730002 - 48730385
Alignment:
| Q |
10 |
acatcatcaatacaacctggacaaacagacaggaattttactacaagatcaaagtttccagtttgagtagctatatgcaatggagttagaccctctatcc |
109 |
Q |
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| T |
48730002 |
acatcttcaatacaacctggacaaacaaacaggaattttactacaagatcaaagtttccagtttgagtagcaatatgcaatggagttagaccctctctcc |
48730101 |
T |
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| Q |
110 |
ctttgactcggacaagatctttattaatatctacaaagcgacaaaccattctgtgatatttgttttgtaaagcaagatgtatgggactgagtccatactc |
209 |
Q |
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| T |
48730102 |
ctttgactcggacaaggtctttattaatatctacaaagcgacaaaccattctgtgatatttgttttgtaaagcaagatgtatgggactgagtccatactc |
48730201 |
T |
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| Q |
210 |
gtttagtttccaagcaaatgaaggttttagtctcataatctcagtggcaaaacttgtatgtccagaagctgcagcaatatgcaaaggagtatcaacaaat |
309 |
Q |
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| T |
48730202 |
gtttagtttccaagcaaatgaaggttttagtctcataatctcagtggcaaaacttgtatgtccagaagctgcagcaatatgcaaaggagtatcaacaaat |
48730301 |
T |
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| Q |
310 |
ggtattaaattatagcgttctaagatgtaaggatccatttgaatcagtttgtatagcaagtctatatctcccatctgtgctgct |
393 |
Q |
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| T |
48730302 |
ggtattaaattatagcgttctaagatgtaaggatcgatttgaatcagtttgaatagcaagtctatatctcccatttgtgctgct |
48730385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 169 - 319
Target Start/End: Complemental strand, 4819091 - 4818941
Alignment:
| Q |
169 |
ttgttttgtaaagcaagatgtatgggactgagtccatactcgtttagtttccaagcaaatgaaggttttagtctcataatctcagtggcaaaacttgtat |
268 |
Q |
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| T |
4819091 |
ttgttttgcatagcaagatggataggactgaatccttgttgatttagcttccaagcaaatgaaggttttaacttcataatctcggaggcaaattggagat |
4818992 |
T |
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| Q |
269 |
gtccagaagctgcagcaatatgcaaaggagtatcaacaaatggtattaaat |
319 |
Q |
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| T |
4818991 |
gacccatagatgcagcaatatgcaaaggagtttcaacaaatggtattaaat |
4818941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 319
Target Start/End: Original strand, 31040743 - 31040851
Alignment:
| Q |
211 |
tttagtttccaagcaaatgaaggttttagtctcataatctcagtggcaaaacttgtatgtccagaagctgcagcaatatgcaaaggagtatcaacaaatg |
310 |
Q |
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| T |
31040743 |
tttagcttccatgcaaatgaaggtttcaatctcataatttcagtggcaaattgaacatgtcccatagatgcagctatatgcagaggagtttcaacaaatg |
31040842 |
T |
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| Q |
311 |
gtattaaat |
319 |
Q |
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| T |
31040843 |
gaattaaat |
31040851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 31075952 - 31076001
Alignment:
| Q |
211 |
tttagtttccaagcaaatgaaggttttagtctcataatctcagtggcaaa |
260 |
Q |
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| T |
31075952 |
tttagcttcaaagcaaatgaaggtttcaatctcataatttcagtggcaaa |
31076001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 319
Target Start/End: Complemental strand, 28865196 - 28865156
Alignment:
| Q |
279 |
tgcagcaatatgcaaaggagtatcaacaaatggtattaaat |
319 |
Q |
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| T |
28865196 |
tgcagcgatatgtaaaggagtttcaacaaatggtattaaat |
28865156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 30648044 - 30648008
Alignment:
| Q |
279 |
tgcagcaatatgcaaaggagtatcaacaaatggtatt |
315 |
Q |
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| T |
30648044 |
tgcagcaatatgtaaaggagtttcaacaaatggtatt |
30648008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 260
Target Start/End: Original strand, 26087519 - 26087599
Alignment:
| Q |
180 |
agcaagatgtatgggactgagtccatactcgtttagtttccaagcaaatgaaggttttagtctcataatctcagtggcaaa |
260 |
Q |
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| T |
26087519 |
agcaagatggatgggactgaatccttgctgatttagtttccaagcatatgaaggtttcaaattcataatttcagtggcaaa |
26087599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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