View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16020_low_43 (Length: 389)
Name: NF16020_low_43
Description: NF16020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16020_low_43 |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 19 - 367
Target Start/End: Complemental strand, 45648112 - 45647767
Alignment:
| Q |
19 |
gcaacaagggacaatattagtttacttaggcaattcacattgtactctccattttgaaggagtactaataactagaatgccgcattctcttttcaaaaat |
118 |
Q |
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| T |
45648112 |
gcaacaagggacaagattagtt-acttaggcaattcacattgtactctccattttgaaggagtactaataactagaatgccgcattctcttttcaaaaat |
45648014 |
T |
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| Q |
119 |
aaaaatacaagcaacttatccgacaaaatatgcataaaaaggtggttcaatgtaagttatgagattaatggaatatgcaccgtaactgtaaagttatttt |
218 |
Q |
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| T |
45648013 |
aaaaatacaagcaacttatcctacaaaatatgcataaaaaggtggttcaatgtaagttatgagattaatggaatatgcaccgtaactgtaaagttatttt |
45647914 |
T |
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| Q |
219 |
acactgacatccaatgaaccaatcacaaatcttcaatcttgcgaatcatgtttgacggttttnnnnnnnnggaagttacacaattatttgttatgtcggt |
318 |
Q |
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| T |
45647913 |
acactgacatccaatgaaccaatcacaaatcttcaatcttgcgaatcatgtttgacggttt--aaaaaaaggaagttacacaattatttgttatgtcggt |
45647816 |
T |
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| Q |
319 |
gggttctaatttgtttttaagtgtaaaacacttttccaccaatggtgca |
367 |
Q |
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| T |
45647815 |
gggttctaatttgtttttaagtgtaaaacacttttccaccaacggtgca |
45647767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 96 - 280
Target Start/End: Complemental strand, 45643015 - 45642830
Alignment:
| Q |
96 |
tgccgcattctcttttcaaaaataaaaatacaagcaacttatccgacaaaatatgc-ataaaaaggtggttcaatgtaagttatgagattaatggaatat |
194 |
Q |
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| T |
45643015 |
tgccgcattctcttttcaaaaataaaaatacaagcaacttatcctaccaaacatcttatgaaaaggtggttcaattcaagttaggaaattaattgaatat |
45642916 |
T |
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| Q |
195 |
gcaccgtaactgtaaagttattttacactgacatccaatgaaccaatcacaaatcttcaatcttgcgaatcatgtttgacggtttt |
280 |
Q |
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| T |
45642915 |
gcattgtaagagtaaagttattttatactgacatccaatgaaccgattacaattcttcaatctagcgaatcatgtttgatggtttt |
45642830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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