View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16020_low_45 (Length: 386)
Name: NF16020_low_45
Description: NF16020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16020_low_45 |
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Alignment Details
Target: chr7 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 47426694 - 47427073
Alignment:
| Q |
1 |
gttccttgtttaggtctttgtcttggttcactaatagaccttgtttttgccctagaagattctgtcttgttcatgtaacttggtgatgaccatgattttc |
100 |
Q |
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| T |
47426694 |
gttccttgtttaggtctttgtcttggttcactaatagaccttgtttttgccctagaagattctgtcttgttcatgtaacttggtgatgaccatgattttc |
47426793 |
T |
|
| Q |
101 |
taggaggcacaataatgtgacgctgagatgttgataaggttgttgggtccatatattcaatcatgtcactgtagtacttttctgggctgtttggtgctgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47426794 |
taggaggcacaataatgtgacgctgagatgttgataaggttgttgggtccatatattcaatcatgtcactgtagtacttttctgggctgtttggtgctgt |
47426893 |
T |
|
| Q |
201 |
gagaattgttctaggattattattcatgtgatt---cttcttcttcaattgattttctcgttttgaaattgatcgacttcttgaataatatgccattgag |
297 |
Q |
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||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47426894 |
gagaattgttctaggattattattcatgtgattctccttctttttcaattgattttctcgttttgaaattgatcgacttcttgaataatatgccattgag |
47426993 |
T |
|
| Q |
298 |
tcatactttctgcttttaacatctagtggaccacttctacttctcataacctccaacatttcttccatgctcatattctt |
377 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47426994 |
tcatactttctgcttttaacatctagtggaccacttctacttctcataacctccaacatttcttccatgctcatattctt |
47427073 |
T |
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