View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16020_low_46 (Length: 381)
Name: NF16020_low_46
Description: NF16020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16020_low_46 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 70 - 361
Target Start/End: Complemental strand, 46352042 - 46351745
Alignment:
| Q |
70 |
ggaatgtgtgatttgtggaacaagaatttatagatgttgagagttagttattttttcttagtgcttgtgtttcagtgcatgtcttcacaaataaggtacg |
169 |
Q |
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| T |
46352042 |
ggaatgtgtgatttgtggaacaagaatttatagatgttgagagttagttattttttcttagtgcttgtgtttcagtgcatgtcttcacaaataaggtacg |
46351943 |
T |
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| Q |
170 |
taaaacaaggacttaaaattggacnnnnnnnncctt------ctttcttttaacaataataacnnnnnnngtatttcttaaatgaaaaaataaatataaa |
263 |
Q |
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|||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
46351942 |
taaaacaaggacttaaaattggactttttttttctttcttttctttcttttaacaataataacaaaaaaagtatttcttaaatgaaaaaataaatataaa |
46351843 |
T |
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| Q |
264 |
gcaagattgaacaaagattcgttccttagttcagttataaattataatgctaggaaatgccagcatgtgtttgcattagtgttaagctctcgtattat |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46351842 |
gcaagattgaacaaagattcgttccttagttcagttataaattataatgccaggaaatgccagcatgtgtttgcattagtgttaagctctcgtattat |
46351745 |
T |
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