View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16020_low_49 (Length: 369)
Name: NF16020_low_49
Description: NF16020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16020_low_49 |
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Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 359
Target Start/End: Complemental strand, 52512287 - 52511929
Alignment:
| Q |
1 |
tgctcaagacactttttacaggaggagaattttataacgctgaaaattatcctaactttggagacacaagtattccaactccaagtagaggcaacaataa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52512287 |
tgctcaagacactttttacaggaggagaattttataacgctgaaaattatcctaactttggagacacaagtattccaactccaagtagaggcaacaataa |
52512188 |
T |
|
| Q |
101 |
tattagtagccagattcacccgagcatcgatatatcaaacttgaatcattactcgtcttcgtcttctaccacatccttggatatgaacatgcagtcatta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
52512187 |
tattagtagccagattcacccgagcatcgatatatcaaacttgaaccattactcgtcttcgtctgctaccacatccttggatatgaacatgcagtcatta |
52512088 |
T |
|
| Q |
201 |
catctattaactaattcatcaacatcatttagtgctaatttacaagaccatcatcatagtagatttactactcatgatcatgacaacctttcttttcatc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52512087 |
gatctattaactaattcatcaacatcatttagtgctaatttacaagaccatcatcatagtagatttactactcatgatcatgacaacctttcttttcatc |
52511988 |
T |
|
| Q |
301 |
ttcatcttatgcagcaccaccaccccacgaacatgtcctcttctactaactctattcat |
359 |
Q |
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|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52511987 |
ttcatcctatgcaacaccaccaccccacgaacatgtcctcttctactaactctattcat |
52511929 |
T |
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