View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16020_low_54 (Length: 363)
Name: NF16020_low_54
Description: NF16020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16020_low_54 |
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Alignment Details
Target: chr7 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 24 - 350
Target Start/End: Complemental strand, 34842216 - 34841890
Alignment:
| Q |
24 |
cagagatctactttaaaccatgtactaaatttccactacccttcgctctgttgtccaaattgggatctccattctctccacatccagctcgatactaaaa |
123 |
Q |
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| T |
34842216 |
cagagatctactttaaaccatgtactaaatttccactacccttcgctctgttgtccaaattgggatctccattctctccacatccagctcgatactaaaa |
34842117 |
T |
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| Q |
124 |
tccctcaaaacaagctaattacaaaggatagaggaatactactaaacacacttatgcatcatataccatattgcataagcaagaacaatcattttagtaa |
223 |
Q |
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| T |
34842116 |
tccctcaaaacaagctaattacaaaggatagaggaatactactaaacacacttatgcatcatataccatattgcataagcaagaacaatcattttagtaa |
34842017 |
T |
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| Q |
224 |
tattttttattcataagcatgatcttgctcctcttcctcctcatcatcatattctccttcttcatcagcagtggcatcctggtactgctggtactcagac |
323 |
Q |
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||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34842016 |
tatcttttattcataagcatgatcttgctcctcttcctcctcgtcatcatattctccttcttcatcagcagtggcatcctggtactgctggtactcagac |
34841917 |
T |
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| Q |
324 |
acgaggtcattcatgttgctctctgct |
350 |
Q |
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| T |
34841916 |
acgaggtcattcatgttgctctctgct |
34841890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 282 - 350
Target Start/End: Original strand, 45452346 - 45452414
Alignment:
| Q |
282 |
tcttcatcagcagtggcatcctggtactgctggtactcagacacgaggtcattcatgttgctctctgct |
350 |
Q |
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| T |
45452346 |
tcttcatctgcagtagcatcttggtattgctggtactctgagacaaggtcattcatgttgctttctgct |
45452414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 346
Target Start/End: Original strand, 11731782 - 11731848
Alignment:
| Q |
280 |
cttcttcatcagcagtggcatcctggtactgctggtactcagacacgaggtcattcatgttgctctc |
346 |
Q |
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| T |
11731782 |
cttcttcgtcagcagttgcatcctggtattgctggtactcagcaacaagatcattcatgttactctc |
11731848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 346
Target Start/End: Original strand, 38176926 - 38176992
Alignment:
| Q |
280 |
cttcttcatcagcagtggcatcctggtactgctggtactcagacacgaggtcattcatgttgctctc |
346 |
Q |
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| T |
38176926 |
cttcctcatcagcagtagcatcctggtattgctggtactctgccaccaaatcattcatgttactctc |
38176992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 346
Target Start/End: Complemental strand, 5532886 - 5532825
Alignment:
| Q |
285 |
tcatcagcagtggcatcctggtactgctggtactcagacacgaggtcattcatgttgctctc |
346 |
Q |
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|||||||| |||||||| |||||||| || ||||||| || || ||||||||||||||||| |
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| T |
5532886 |
tcatcagcggtggcatcttggtactgttgatactcagcaaccagatcattcatgttgctctc |
5532825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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