View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16020_low_56 (Length: 362)
Name: NF16020_low_56
Description: NF16020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16020_low_56 |
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Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 47382704 - 47383049
Alignment:
| Q |
1 |
gcaagttatcatgaggatatttgaatttgcttcatcaatgcagacagaacatatcatgcctagtaggactcactattgtgtatatatccttgaaatttca |
100 |
Q |
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| T |
47382704 |
gcaagttatcatgaggatatttgaatttgcttcatcaatgcagacagaacatatcatgcctagtaggactcactattgtgtatatatccttgaaatttca |
47382803 |
T |
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| Q |
101 |
aaccctacgcagaaaaataaaaggcattggatcttgttttgttggatctagattttcccaaaacacaatcatgatgcatggatcagacagccccaaacac |
200 |
Q |
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| T |
47382804 |
aaccctacgcagaaaaataaaaggcattggatcttgttttgttggatctagattttcccaaaacacaatcatgatgcatggatcagacagccccaaacac |
47382903 |
T |
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| Q |
201 |
gtacctaaaccactattttagcgaatcataattcttgtaaaacattgattttccccccataacattttcttcaccatttgtatataaacatataattcat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47382904 |
gtacctaaaccactattttagcgaatcataattcttgtaaaacattgatttttcccccataacattttcttcaccatttgtatataaacatataattcat |
47383003 |
T |
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| Q |
301 |
caagcacttactcttttatttcaaaggttttgtactcatgtttcat |
346 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47383004 |
caagcacttactcttttatttcaaaggttttgtactcatgtttcat |
47383049 |
T |
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