View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16020_low_57 (Length: 362)
Name: NF16020_low_57
Description: NF16020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16020_low_57 |
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Alignment Details
Target: chr2 (Bit Score: 351; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 7956705 - 7957055
Alignment:
| Q |
1 |
tttgtgaatagttattttcttggtatgggcatatgttccagaatcatggctacattctattggcatttcctactatcctagcaggttagacacctcaatt |
100 |
Q |
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| T |
7956705 |
tttgtgaatagttattttcttggtatgggcatatgttccagaatcatggctacattctattggcatttcctactatcctagcaggttagacacctcaatt |
7956804 |
T |
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| Q |
101 |
cctgctatcatttgaagctttatcaaccatgcaggtcctctactgtatgtaattgtttggtgtcacaaaaacaagaaatttactttgaaataactctgaa |
200 |
Q |
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| T |
7956805 |
cctgctatcatttgaagctttatcaaccatgcaggtcctctactgtatgtaattgtttggtgtcacaaaaacaagaaatttactttgaaataactctgaa |
7956904 |
T |
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| Q |
201 |
gtgagattaattctggagccttaatttaattatgtacaaatgtaagctcagttaaggtgtatgaagcagatgtcgtgaactctttagtttagctgttaaa |
300 |
Q |
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| T |
7956905 |
gtgagattaattctggagccttaatttaattatgtacaaatgtaagctcagttaaggtgtatgaagcagatgtcgtgaactctttagtttagctgttaaa |
7957004 |
T |
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| Q |
301 |
ctacttatgcttttcagatactgggctttggcagtaccaacttatgtgatg |
351 |
Q |
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| T |
7957005 |
ctacttatgcttttcagatactgggctttggcagtaccaacttatgtgatg |
7957055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 35702966 - 35703144
Alignment:
| Q |
1 |
tttgtgaatagttattttcttggtatgggcatatgttccagaatcatggctacattctattggcatttcctactatcctagcaggttagacacctcaatt |
100 |
Q |
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| T |
35702966 |
tttgtgaatagttattttcttggtatgggcatatgttccagaatcatggctacattctattggcatctcctactatcctagcaggttagacacctcaatt |
35703065 |
T |
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| Q |
101 |
cctgctatcatttgaagctttatcaaccatgcaggtcctctactgtatgtaattgtttggtgtcacaaaaacaagaaat |
179 |
Q |
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| T |
35703066 |
ccttttatcatttgaagcttttgcaaccatgcaggtcttctgctctatgtaattgtttggttgcacaaaaataagaaat |
35703144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 298 - 351
Target Start/End: Original strand, 35703273 - 35703326
Alignment:
| Q |
298 |
aaactacttatgcttttcagatactgggctttggcagtaccaacttatgtgatg |
351 |
Q |
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| T |
35703273 |
aaactacttatgcttttcagatactgggctttggcggtaccaacttatctgatg |
35703326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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