View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16020_low_6 (Length: 649)
Name: NF16020_low_6
Description: NF16020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16020_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 596; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 15 - 630
Target Start/End: Original strand, 4166667 - 4167282
Alignment:
| Q |
15 |
catagggagaaagtggagggaatatcatggcagcaatgactggaaggggatgttggatcccttggacgacaacctccggcgagaggttgttagatatggc |
114 |
Q |
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| T |
4166667 |
catagggagaaagtggagggaatatcatggcagcaatgactggaaggggatgttggatcccttggatgacaacctccggcgagaggttgttagatatggc |
4166766 |
T |
|
| Q |
115 |
gatttggttcaagctgcttatcaagcttttcacgctgatcctgccatgtcaacaactgaagcaccccatcatcaacaggtatcgttgccggagagatctt |
214 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
4166767 |
gatttggttcaagctgcttatcaagcttttcatgctgatcctgccatgtcaacaactgaagcaccccatcaccaacaggtgtcgttgccggagagatctt |
4166866 |
T |
|
| Q |
215 |
ataaagtaaccaagagtctgtatgccacatcatcaattggattacctaaatgggttgatgaggtggctccagatcttggttggatgacccagcgttctag |
314 |
Q |
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| T |
4166867 |
ataaagtaaccaagagtctgtatgccacatcatcaattggattacctaaatgggttgatgaggtggctccagatcttggttggatgacccagcgttctag |
4166966 |
T |
|
| Q |
315 |
ctgggtcggatatgttgcagtttgcgacgataaaagagagattgcaagaatgggacgaagagatattgtgatatctcttcgtggaacttccacttgtcta |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4166967 |
ctgggtcggatatgttgcagtttgcgacgataaaagagagattgcaagaatgggacgaagagatattgtgatatctcttcgtggaacttccacttgtcta |
4167066 |
T |
|
| Q |
415 |
gaatgggctgaaaatatgagggcccaattagtcgatttacccgaggatgctcagactcagactcaaacacagacccaatcaaagcccaaagttgagtgtg |
514 |
Q |
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| T |
4167067 |
gaatgggctgaaaatatgagggcccaattagtcgatttacccgaggatgctcagacacagactcaaacacagacccaatcaaagcccaaagttgagtgtg |
4167166 |
T |
|
| Q |
515 |
ggttcatgagcttgtacaaaacaaaaggggctcatgtgcaaagcctatccgagtccgttgttgaagaagtgcgacgccttattgaactttacaaaggcga |
614 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4167167 |
ggttcatgagcttgtacaaaacaaaaggggctcatgtgcaaagcctatccgagtccgttgttgaagaagtgcgacgccttattgaactttacaaaggcga |
4167266 |
T |
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| Q |
615 |
agaattaagcataacc |
630 |
Q |
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| T |
4167267 |
agaattaagcataacc |
4167282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 4e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 214 - 444
Target Start/End: Complemental strand, 41314844 - 41314614
Alignment:
| Q |
214 |
tataaagtaaccaagagtctgtatgccacatcatcaattggattacctaaatgggttgatgaggtggctccagatcttggttggatgacccagcgttcta |
313 |
Q |
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||||||||||| || ||| | |||||||||||||||||||| |||||||||||||||||||| |||||||| ||||| || |||||||||||| | || | |
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| T |
41314844 |
tataaagtaactaaaagtttatatgccacatcatcaattggtttacctaaatgggttgatgatgtggctccggatctcggatggatgacccagagatcca |
41314745 |
T |
|
| Q |
314 |
gctgggtcggatatgttgcagtttgcgacgataaaagagagattgcaagaatgggacgaagagatattgtgatatctcttcgtggaacttccacttgtct |
413 |
Q |
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||||| | |||||||| || |||||| |||| |||||||||||| ||||| | ||| | ||||||||||| || ||||| |||||||| |||| ||||| |
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| T |
41314744 |
gctggattggatatgtggctgtttgcaacgacaaaagagagatttcaagattaggaaggagagatattgttatctctctccgtggaaccgccacgtgtct |
41314645 |
T |
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| Q |
414 |
agaatgggctgaaaatatgagggcccaatta |
444 |
Q |
| |
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|||||||| || |||||| | ||||||||| |
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| T |
41314644 |
tgaatgggccgagaatatgcgagcccaatta |
41314614 |
T |
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