View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16020_low_64 (Length: 325)
Name: NF16020_low_64
Description: NF16020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16020_low_64 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 11 - 306
Target Start/End: Original strand, 52404802 - 52405093
Alignment:
| Q |
11 |
catcatcaatgatagcatgcatgagagtgcttttccctgataatagagattgcaaaattagcagagattaaaagagcatacaaatataacattactatag |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
52404802 |
catcatcaatgatagcatgcatgagagtgcttttccctgataatagagattgcaaagttagcagagattaaaggagcatacaaatataacattactatag |
52404901 |
T |
|
| Q |
111 |
atgcatacaaatattaaaagaattcaattgattttttcaagtatacaaagaaaagtaaaactcacttcgacaatatatatttgaaccagacaagttgaca |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
52404902 |
atgcatacaaatattaaaagaattcaattgattttttcaagtatacaaagaaaagtaaaacccacttcgaca----atatttgaaccagacaagttgaca |
52404997 |
T |
|
| Q |
211 |
ttcctccacaaccagagtacaaatctagcaactttagctctggttttttcttttcatcactagtatcagtgtttgcacttttagagtcatcctcag |
306 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
52404998 |
ttcctccacagccagagtataaatctagcaactttagctctggttttttcttttcatcactagtatcagtgtttgcacttttagagtcaacctcag |
52405093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 104
Target Start/End: Original strand, 52415586 - 52415661
Alignment:
| Q |
29 |
gcatgagagtgcttttccctgataatagagattgcaaaattagcagagattaaaagagcatacaaatataacatta |
104 |
Q |
| |
|
||||||| | ||||||||||| |||||||||||||||| |||||||||||||||||| |||| ||| ||||||||| |
|
|
| T |
52415586 |
gcatgagggagcttttccctggtaatagagattgcaaagttagcagagattaaaagaacatataaaaataacatta |
52415661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 254 - 304
Target Start/End: Original strand, 40716871 - 40716921
Alignment:
| Q |
254 |
ttttttcttttcatcactagtatcagtgtttgcacttttagagtcatcctc |
304 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
40716871 |
ttttttcttttcatcactagtataagtgtttgcacttttagagtcaacctc |
40716921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 203 - 306
Target Start/End: Complemental strand, 28214799 - 28214696
Alignment:
| Q |
203 |
agttgacattcctccacaaccagagtacaaatctagcaactttagctctggttttttcttttcatcactagtatcagtgtttgcacttttagagtcatcc |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| || |||||||| ||||||||||||||||| || |
|
|
| T |
28214799 |
agttgacattcctccacaaccagagtacaaatctagcaacttcagctctggttttttcttatcatcattaatatcagtgattgcacttttagagtcaacc |
28214700 |
T |
|
| Q |
303 |
tcag |
306 |
Q |
| |
|
|||| |
|
|
| T |
28214699 |
tcag |
28214696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 259
Target Start/End: Complemental strand, 31491268 - 31491212
Alignment:
| Q |
203 |
agttgacattcctccacaaccagagtacaaatctagcaactttagctctggtttttt |
259 |
Q |
| |
|
||||||||| || || |||||||| ||||| ||||||||||| |||||||||||||| |
|
|
| T |
31491268 |
agttgacatcccaccgcaaccagaatacaagtctagcaacttcagctctggtttttt |
31491212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 207 - 306
Target Start/End: Original strand, 33853079 - 33853178
Alignment:
| Q |
207 |
gacattcctccacaaccagagtacaaatctagcaactttagctctggttttttcttttcatcactagtatcagtgtttgcacttttagagtcatcctcag |
306 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| | || ||| |||||||||||| ||| | |||||||||||| || |||||| ||| |||||| |
|
|
| T |
33853079 |
gacattcctccgcaaccagagtacaaatctagcaacttcatctgtggctttttcttttcaacacaaatatcagtgtttgaacatttagaatcaacctcag |
33853178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University