View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16020_low_66 (Length: 324)
Name: NF16020_low_66
Description: NF16020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16020_low_66 |
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Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 14 - 305
Target Start/End: Complemental strand, 7956727 - 7956436
Alignment:
| Q |
14 |
ccaagaaaataactattcacaaaggaaaatgaacaggtaaaaatcaaaatcataaaacgccacaggaacatcacaggagaccttagagacatttgttaac |
113 |
Q |
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| T |
7956727 |
ccaagaaaataactattcacaaaggaaaatgaacaggtaaaaatcaaaatcataaaacgccacaggaacatcacaggagaccttagagacatttgttaac |
7956628 |
T |
|
| Q |
114 |
gcatggtaaactagtagttatacacaattgtacagaatacaaagttattttgatcatggagttacccagagcaaatcagagatgttaagtaggatggggc |
213 |
Q |
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| T |
7956627 |
acatggtaaactagtagttatacacaattgtacagaatacaaagttattttgatcatggagttacccagagcaaatcagagatgttaagtaggatggggc |
7956528 |
T |
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| Q |
214 |
ttcaaggtgaacccctgttcctagttgttttactctaattnnnnnnntaataatcaacttataaggaaataccataatttatgcaattataa |
305 |
Q |
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| T |
7956527 |
ttcaaggtgaacccctgttcctagttgttttactctaattaaaaaaataataatcaacgtataaggaaataccataatttatgcaattataa |
7956436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 14 - 137
Target Start/End: Complemental strand, 35702988 - 35702869
Alignment:
| Q |
14 |
ccaagaaaataactattcacaaaggaaaatgaacag-gtaaaaatcaaaatcataaaacgccacaggaacatcacaggagaccttagagacatttgttaa |
112 |
Q |
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||||||||||||||||||||||||||||||||||| ||| |||| |||| ||| ||||||||||||||||| || |||| |||||||||| |||| |
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| T |
35702988 |
ccaagaaaataactattcacaaaggaaaatgaacaaagtataaataaaaa-----aaatgccacaggaacatcacaagaaacctcagagacattttttaa |
35702894 |
T |
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| Q |
113 |
cgcatggtaaactagtagttataca |
137 |
Q |
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| T |
35702893 |
cacatggtaaactagtagttataca |
35702869 |
T |
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