View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16020_low_69 (Length: 319)
Name: NF16020_low_69
Description: NF16020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16020_low_69 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 314
Target Start/End: Complemental strand, 45549612 - 45549317
Alignment:
| Q |
18 |
aattcaacaaagtatcagatttatttagactcctcattatgcatcaatatatcagtgtactatttaaaaagatttaatgcttaatttgataaaatgatca |
117 |
Q |
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| T |
45549612 |
aattcaacaaagtatcagatttatttagactcctcattatgtatcaatatatcagtgtactatttaaaaagatttaatgcttaatttgataaaatgatca |
45549513 |
T |
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| Q |
118 |
cttaattgtgttgatttattaattgtatattcgacaatatcatcaaacttgttttcaaataccaacattaaattagtcagtgaaactggactggaatctc |
217 |
Q |
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| T |
45549512 |
cttaattgtgttgatttattaatt-tatattcaacaatatcatcaaacttgttttcaaataccaacattaaattagtcagtgaaactggactggaatctc |
45549414 |
T |
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| Q |
218 |
ttaaataaggttaggttttgggttcagccttgtgatgnnnnnnnncatgattgggatgggagatctaaataaagctggtaatcagtcctatgctact |
314 |
Q |
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| T |
45549413 |
ttaaataaggttaggttttgggttcagccttgtgatgaaaaaaaacatgattgggatgggagatctaaataaagctggtaatcagtccaatgatact |
45549317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 93 - 229
Target Start/End: Complemental strand, 45545604 - 45545468
Alignment:
| Q |
93 |
aatgcttaatttgataaaatgatcacttaattgtgttgatttattaattgtatattcgacaatatcatcaaacttgttttcaaataccaacattaaatta |
192 |
Q |
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| T |
45545604 |
aatgcttaatttgattaaatgagtacttaattgtgtggtttt-ttaattgtatattcaacaattttatcaaacttcttttcaaataccaacattaaatta |
45545506 |
T |
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| Q |
193 |
gtc-agtgaaactggactggaatctcttaaataaggtt |
229 |
Q |
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| T |
45545505 |
atctagtgaaactggactgagatctcttaaataaggtt |
45545468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 60 - 95
Target Start/End: Complemental strand, 45550790 - 45550755
Alignment:
| Q |
60 |
atcaatatatcagtgtactatttaaaaagatttaat |
95 |
Q |
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| T |
45550790 |
atcaatatatcagtgtactatttaaacagatttaat |
45550755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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