View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16020_low_70 (Length: 316)
Name: NF16020_low_70
Description: NF16020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16020_low_70 |
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Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 4 - 310
Target Start/End: Complemental strand, 32961267 - 32960961
Alignment:
| Q |
4 |
caatgatgacccaataaaaatgctatagaaagtaaaacatcatgtaaactttatgtctaattgaagtaaaagaaagaaacaaatgatcattaataaagtc |
103 |
Q |
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| T |
32961267 |
caatgatgacccaataaaaatgctatagaaagtaaaacatcatgtaaactttatgtctaattgaagtaaaagaaagaaacaaatgatcattaataaagtc |
32961168 |
T |
|
| Q |
104 |
tcattaagaggaatacagaagaaaacacaaagatacaatagtgnnnnnnncaaacacatgaaaaaggaacatagctagcttttcttcctagatacaaatt |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32961167 |
tcattaagaggaatacagaagaaaacacaaagatacaatagtgaaaaaaacaaacacatgaaaaaggaacatagctagcttttcttcctagatacaaatt |
32961068 |
T |
|
| Q |
204 |
ctaatttttcttccaaacattcactccataaaggtctccataacatctgagtacatacctcctccttctgaattcctatactccacaccttgttgttgtt |
303 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32961067 |
ctaatttttcttccaaacatttactccataaaggtctccataacatctgagtacatacctcctccttctgaattcctatactccacaccttgttgttgtt |
32960968 |
T |
|
| Q |
304 |
gatgatg |
310 |
Q |
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||||||| |
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| T |
32960967 |
gatgatg |
32960961 |
T |
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