View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16020_low_76 (Length: 302)

Name: NF16020_low_76
Description: NF16020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16020_low_76
NF16020_low_76
[»] chr3 (10 HSPs)
chr3 (57-249)||(45004358-45004550)
chr3 (12-72)||(45004002-45004062)
chr3 (142-187)||(22754761-22754806)
chr3 (141-189)||(39926477-39926525)
chr3 (139-184)||(51171086-51171131)
chr3 (139-182)||(16280912-16280955)
chr3 (174-272)||(25227342-25227440)
chr3 (139-168)||(16280575-16280604)
chr3 (141-182)||(44798745-44798786)
chr3 (142-182)||(39926413-39926453)
[»] chr4 (14 HSPs)
chr4 (101-302)||(43634265-43634452)
chr4 (12-71)||(43634453-43634512)
chr4 (139-189)||(46844622-46844672)
chr4 (137-182)||(5314398-5314443)
chr4 (133-182)||(23811319-23811367)
chr4 (138-182)||(23811350-23811394)
chr4 (141-187)||(45682811-45682857)
chr4 (133-188)||(5314359-5314415)
chr4 (210-270)||(32310396-32310456)
chr4 (139-182)||(32304743-32304786)
chr4 (136-186)||(10011622-10011672)
chr4 (136-186)||(10018763-10018813)
chr4 (209-270)||(25146874-25146935)
chr4 (229-270)||(26973307-26973348)
[»] chr2 (8 HSPs)
chr2 (140-189)||(24582535-24582584)
chr2 (140-182)||(24582470-24582512)
chr2 (139-182)||(3816277-3816320)
chr2 (195-262)||(5289776-5289843)
chr2 (209-264)||(28030432-28030487)
chr2 (191-270)||(42882455-42882534)
chr2 (133-182)||(24582495-24582545)
chr2 (195-271)||(41191332-41191408)
[»] chr1 (5 HSPs)
chr1 (133-189)||(32306406-32306462)
chr1 (138-182)||(21258316-21258360)
chr1 (137-182)||(19062888-19062933)
chr1 (137-182)||(32306445-32306490)
chr1 (141-182)||(32713247-32713288)
[»] chr5 (11 HSPs)
chr5 (137-186)||(17066848-17066897)
chr5 (139-182)||(20419551-20419594)
chr5 (141-206)||(3040062-3040127)
chr5 (133-187)||(20419513-20419568)
chr5 (142-182)||(17854694-17854734)
chr5 (135-186)||(2190333-2190384)
chr5 (139-182)||(14410733-14410776)
chr5 (137-184)||(18936713-18936760)
chr5 (140-182)||(25994590-25994632)
chr5 (140-182)||(25994911-25994953)
chr5 (140-181)||(126849-126890)
[»] chr7 (8 HSPs)
chr7 (133-189)||(34328605-34328661)
chr7 (127-189)||(9384639-9384701)
chr7 (140-182)||(23284773-23284815)
chr7 (142-189)||(11561423-11561470)
chr7 (143-185)||(43466745-43466787)
chr7 (145-182)||(34328644-34328681)
chr7 (138-182)||(9384678-9384722)
chr7 (138-166)||(47441665-47441693)
[»] chr6 (10 HSPs)
chr6 (138-184)||(9875774-9875820)
chr6 (191-270)||(5741523-5741602)
chr6 (137-182)||(9863453-9863498)
chr6 (133-182)||(9863519-9863568)
chr6 (211-270)||(4362453-4362512)
chr6 (143-182)||(32879736-32879775)
chr6 (212-270)||(5741178-5741236)
chr6 (133-189)||(9863551-9863607)
chr6 (142-182)||(26622233-26622273)
chr6 (142-182)||(26728211-26728251)
[»] chr8 (2 HSPs)
chr8 (143-189)||(31271851-31271897)
chr8 (144-182)||(13461231-13461269)
[»] scaffold0051 (1 HSPs)
scaffold0051 (227-270)||(21135-21178)
[»] scaffold0012 (1 HSPs)
scaffold0012 (143-181)||(36154-36192)


Alignment Details
Target: chr3 (Bit Score: 133; Significance: 4e-69; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 57 - 249
Target Start/End: Original strand, 45004358 - 45004550
Alignment:
Q  57 aagaaactggaatttggaattagaaatcactgcgtgaattcaaatggaaaaatatttccgcggaaattctattgtaaattcctgcgtgagttaactcacg 156  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||    
T  45004358 aagaaactggaatttggaatcagtaatcactgcgtgaattcaaatggaaaaatatttatgcagaaattctattgtaaattcctgcgtgagttaactcacg 45004457  T
Q  157 caagtgttaattacagcgtgagttaagttgcgcggcgttagttaactaatataggggtattttgggcaacgctgcaggatgcgagcgaaaagt 249  Q
    |||||||||||| || |||||||||||||||| ||||||||||||||||  ||||||||||||| |||| |||||||   |||||||||||||    
T  45004458 caagtgttaattccaacgtgagttaagttgcgtggcgttagttaactaacgtaggggtattttgagcaaggctgcagagcgcgagcgaaaagt 45004550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 45004002 - 45004062
Alignment:
Q  12 atgaataaaggggaagcaactaaattggaataaaaggataacgataagaaactggaatttg 72  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  45004002 atgaataaagaggaagcaactaaattggaataaaaggataacaataagaaactggattttg 45004062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 142 - 187
Target Start/End: Complemental strand, 22754806 - 22754761
Alignment:
Q  142 gtgagttaactcacgcaagtgttaattacagcgtgagttaagttgc 187  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  22754806 gtgagttaactcacgcaagtgttaattccagcgtgagttaagttgc 22754761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 141 - 189
Target Start/End: Original strand, 39926477 - 39926525
Alignment:
Q  141 cgtgagttaactcacgcaagtgttaattacagcgtgagttaagttgcgc 189  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  39926477 cgtgagttaactcacgaaagtgttaattccagcgtgagttaagttgcgc 39926525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 51171131 - 51171086
Alignment:
Q  139 tgcgtgagttaactcacgcaagtgttaattacagcgtgagttaagt 184  Q
    |||||||||||||||||||| ||||||||| |||||||| ||||||    
T  51171131 tgcgtgagttaactcacgcacgtgttaatttcagcgtgacttaagt 51171086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 139 - 182
Target Start/End: Original strand, 16280912 - 16280955
Alignment:
Q  139 tgcgtgagttaactcacgcaagtgttaattacagcgtgagttaa 182  Q
    ||||||||||||||||| |||||||||||| | |||||||||||    
T  16280912 tgcgtgagttaactcacccaagtgttaatttcggcgtgagttaa 16280955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 272
Target Start/End: Original strand, 25227342 - 25227440
Alignment:
Q  174 gtgagttaagttgcgcggcgttagttaactaatataggggtattttgggcaacgctgcaggatgcgagcgaaaagtaccgggtgaagagcagaattcga 272  Q
    |||| ||||||| ||| ||||||||||| |||  || || ||||||  | |  ||||||||| ||||||||||||| | ||| ||||||||||||||||    
T  25227342 gtgacttaagttacgctgcgttagttaagtaacgtaaggatatttttaggatggctgcaggacgcgagcgaaaagtgcagggggaagagcagaattcga 25227440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 168
Target Start/End: Complemental strand, 16280604 - 16280575
Alignment:
Q  139 tgcgtgagttaactcacgcaagtgttaatt 168  Q
    ||||||||||||||||||||||||||||||    
T  16280604 tgcgtgagttaactcacgcaagtgttaatt 16280575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 182
Target Start/End: Original strand, 44798745 - 44798786
Alignment:
Q  141 cgtgagttaactcacgcaagtgttaattacagcgtgagttaa 182  Q
    ||||||||||||||||||||||||| || |||||||| ||||    
T  44798745 cgtgagttaactcacgcaagtgttagttccagcgtgaattaa 44798786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 39926413 - 39926453
Alignment:
Q  142 gtgagttaactcacgcaagtgttaattacagcgtgagttaa 182  Q
    ||||||||| ||||||||||||||||| |||||||| ||||    
T  39926413 gtgagttaattcacgcaagtgttaatttcagcgtgaattaa 39926453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 101 - 302
Target Start/End: Complemental strand, 43634452 - 43634265
Alignment:
Q  101 tggaaaaatatttccgcggaaattctattgtaaattcctgcgtgagttaactcacgcaagtgttaattacagcgtgagttaagttgcgcggcgttagtta 200  Q
    |||||||||||||  || |||||||||||||||||||||||||||||||||||| | |||| ||||||  |  ||||||||||||||||| ||||||       
T  43634452 tggaaaaatatttt-gcagaaattctattgtaaattcctgcgtgagttaactcatgtaagtattaattttaaggtgagttaagttgcgcgacgttaga-- 43634356  T
Q  201 actaatataggggtattttgggcaacgctgcaggatgcgagcgaaaagtaccgggtgaagagcagaattcgaagaaatagagatcgaaggatgttagatg 300  Q
               |||||||||| |||||||| ||| ||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||    
T  43634355 -----------ggtattttggacaacgctgtagggtgcgagcaaaaagtactgggtgaagagtagaattcgaagaaatagagatcgaaggatgttagatg 43634267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 43634512 - 43634453
Alignment:
Q  12 atgaataaaggggaagcaactaaattggaataaaaggataacgataagaaactggaattt 71  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43634512 atgaataaaggggaagcaactaaattggaataaaaggataacgataagaaactggaattt 43634453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 139 - 189
Target Start/End: Original strand, 46844622 - 46844672
Alignment:
Q  139 tgcgtgagttaactcacgcaagtgttaattacagcgtgagttaagttgcgc 189  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||    
T  46844622 tgcgtgagttaactcacgcaagtgttaatttcaacgtgagttaagttgcgc 46844672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 182
Target Start/End: Complemental strand, 5314443 - 5314398
Alignment:
Q  137 cctgcgtgagttaactcacgcaagtgttaattacagcgtgagttaa 182  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||    
T  5314443 cctgcgtgagttaactcacgcaagtgttaattccagcgtgaattaa 5314398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 182
Target Start/End: Complemental strand, 23811367 - 23811319
Alignment:
Q  133 aattcctgcgtgagttaactcacgcaagtgttaattacagcgtgagttaa 182  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  23811367 aattccagcgtgagttaactcacgcaagt-ttaattacagcgtgagttaa 23811319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 23811394 - 23811350
Alignment:
Q  138 ctgcgtgagttaactcacgcaagtgttaattacagcgtgagttaa 182  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||    
T  23811394 ctgcgtgagataactcacgcaagtgttaattccagcgtgagttaa 23811350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 187
Target Start/End: Complemental strand, 45682857 - 45682811
Alignment:
Q  141 cgtgagttaactcacgcaagtgttaattacagcgtgagttaagttgc 187  Q
    |||||||||||||| ||||||||||||| || |||||||||||||||    
T  45682857 cgtgagttaactcaggcaagtgttaattccaacgtgagttaagttgc 45682811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 188
Target Start/End: Complemental strand, 5314415 - 5314359
Alignment:
Q  133 aattcctgcgtgagttaactcacgcaagtgttaa-ttacagcgtgagttaagttgcg 188  Q
    |||||| |||||| |||||||||||||||||||| || |||||| ||||||||||||    
T  5314415 aattccagcgtgaattaactcacgcaagtgttaatttccagcgtaagttaagttgcg 5314359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 270
Target Start/End: Original strand, 32310396 - 32310456
Alignment:
Q  210 ggggtattttgggcaacgctgcaggatgcgagcgaaaagtaccgggtgaagagcagaattc 270  Q
    |||||| ||| || |||| ||||||  ||||||||||||||| ||||||||||||||||||    
T  32310396 ggggtaatttaggtaacggtgcagggcgcgagcgaaaagtactgggtgaagagcagaattc 32310456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 139 - 182
Target Start/End: Original strand, 32304743 - 32304786
Alignment:
Q  139 tgcgtgagttaactcacgcaagtgttaattacagcgtgagttaa 182  Q
    ||||||||||||||||| || ||||||||| |||||||||||||    
T  32304743 tgcgtgagttaactcacacatgtgttaatttcagcgtgagttaa 32304786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 186
Target Start/End: Original strand, 10011622 - 10011672
Alignment:
Q  136 tcctgcgtgagttaactcacgcaagtgttaattacagcgtgagttaagttg 186  Q
    |||||| |||||||||||||||||||||| ||| |||||||| ||| ||||    
T  10011622 tcctgcatgagttaactcacgcaagtgttgatttcagcgtgaattacgttg 10011672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 186
Target Start/End: Original strand, 10018763 - 10018813
Alignment:
Q  136 tcctgcgtgagttaactcacgcaagtgttaattacagcgtgagttaagttg 186  Q
    |||||| |||||||||||||||||||||| ||| |||||||| ||| ||||    
T  10018763 tcctgcatgagttaactcacgcaagtgttgatttcagcgtgaattacgttg 10018813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 270
Target Start/End: Complemental strand, 25146935 - 25146874
Alignment:
Q  209 aggggtattttgggcaacgctgcaggatgcgagcgaaaagtaccgggtgaagagcagaattc 270  Q
    ||||||| ||| ||||||||||||||  |||||||||||||   ||||||||||||| ||||    
T  25146935 aggggtaatttaggcaacgctgcagggcgcgagcgaaaagtgttgggtgaagagcagcattc 25146874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 270
Target Start/End: Complemental strand, 26973348 - 26973307
Alignment:
Q  229 tgcaggatgcgagcgaaaagtaccgggtgaagagcagaattc 270  Q
    ||||||||||||||||||||| | |||||||||||| |||||    
T  26973348 tgcaggatgcgagcgaaaagtgcagggtgaagagcaaaattc 26973307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 140 - 189
Target Start/End: Original strand, 24582535 - 24582584
Alignment:
Q  140 gcgtgagttaactcacgcaagtgttaattacagcgtgagttaagttgcgc 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24582535 gcgtgagttaactcacgcaagtgttaattacagcgtgagttaagttgcgc 24582584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 182
Target Start/End: Original strand, 24582470 - 24582512
Alignment:
Q  140 gcgtgagttaactcacgcaagtgttaattacagcgtgagttaa 182  Q
    |||||| |||||||||||||||||||||| |||||||||||||    
T  24582470 gcgtgacttaactcacgcaagtgttaattccagcgtgagttaa 24582512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 139 - 182
Target Start/End: Original strand, 3816277 - 3816320
Alignment:
Q  139 tgcgtgagttaactcacgcaagtgttaattacagcgtgagttaa 182  Q
    |||||||||||||| ||||| |||||||||||| ||||||||||    
T  3816277 tgcgtgagttaacttacgcaggtgttaattacaacgtgagttaa 3816320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 262
Target Start/End: Complemental strand, 5289843 - 5289776
Alignment:
Q  195 tagttaactaatataggggtattttgggcaacgctgcaggatgcgagcgaaaagtaccgggtgaagag 262  Q
    |||||||||||   ||||||||||||||||  | |||||||||||||||||| || | ||||||||||    
T  5289843 tagttaactaacgcaggggtattttgggcatggttgcaggatgcgagcgaaatgtgctgggtgaagag 5289776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 264
Target Start/End: Complemental strand, 28030487 - 28030432
Alignment:
Q  209 aggggtattttgggcaacgctgcaggatgcgagcgaaaagtaccgggtgaagagca 264  Q
    ||||||| ||| ||||||||||||||  ||||||||||||| | ||||||||||||    
T  28030487 aggggtaatttaggcaacgctgcagggcgcgagcgaaaagtgctgggtgaagagca 28030432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 270
Target Start/End: Complemental strand, 42882534 - 42882455
Alignment:
Q  191 gcgttagttaactaatataggggtattttgggcaacgctgcaggatgcgagcgaaaagtaccgggtgaagagcagaattc 270  Q
    ||||||||||||||   |||||||||||| | ||  ||||||||  | ||||||||||| | ||||||||||||||||||    
T  42882534 gcgttagttaactagcgtaggggtattttagtcatggctgcagggcgtgagcgaaaagtgcagggtgaagagcagaattc 42882455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 182
Target Start/End: Original strand, 24582495 - 24582545
Alignment:
Q  133 aattcctgcgtgagttaactcacgcaagtgttaatt-acagcgtgagttaa 182  Q
    |||||| |||||||||||||||| ||||||||||||  |||||||||||||    
T  24582495 aattccagcgtgagttaactcactcaagtgttaattcccagcgtgagttaa 24582545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 271
Target Start/End: Complemental strand, 41191408 - 41191332
Alignment:
Q  195 tagttaactaatataggggtattttgggcaacgctgcaggatgcgagcgaaaagtaccgggtgaagagcagaattcg 271  Q
    ||||||||||  | ||||| |||||| |||   |||||||||||||||||||  | | |||||||||||||||||||    
T  41191408 tagttaactagcacaggggcattttgcgcatgactgcaggatgcgagcgaaatttgctgggtgaagagcagaattcg 41191332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 32306462 - 32306406
Alignment:
Q  133 aattcctgcgtgagttaactcacgcaagtgttaattacagcgtgagttaagttgcgc 189  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  32306462 aattccagcgtgagttaactcacgcaagtgttaatttcagcgtgagttaagttgcgc 32306406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 21258316 - 21258360
Alignment:
Q  138 ctgcgtgagttaactcacgcaagtgttaattacagcgtgagttaa 182  Q
    ||||||||||||||||||||||||||||||| |||||||||||||    
T  21258316 ctgcgtgagttaactcacgcaagtgttaattccagcgtgagttaa 21258360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 19062888 - 19062933
Alignment:
Q  137 cctgcgtgagttaactcacgcaagtgttaattacagcgtgagttaa 182  Q
    ||||| |||||||| ||||||||||||||||| |||||||||||||    
T  19062888 cctgcatgagttaattcacgcaagtgttaatttcagcgtgagttaa 19062933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 182
Target Start/End: Complemental strand, 32306490 - 32306445
Alignment:
Q  137 cctgcgtgagttaactcacgcaagtgttaattacagcgtgagttaa 182  Q
    |||||||||||||||||| |||||||| |||| |||||||||||||    
T  32306490 cctgcgtgagttaactcatgcaagtgtcaattccagcgtgagttaa 32306445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 182
Target Start/End: Complemental strand, 32713288 - 32713247
Alignment:
Q  141 cgtgagttaactcacgcaagtgttaattacagcgtgagttaa 182  Q
    ||||||||||||||||||||||||||||  ||||||||||||    
T  32713288 cgtgagttaactcacgcaagtgttaattttagcgtgagttaa 32713247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 137 - 186
Target Start/End: Complemental strand, 17066897 - 17066848
Alignment:
Q  137 cctgcgtgagttaactcacgcaagtgttaattacagcgtgagttaagttg 186  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  17066897 cctgcgtgagttaactcatgcaagtgttaattccagcgtgagttaagttg 17066848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 182
Target Start/End: Complemental strand, 20419594 - 20419551
Alignment:
Q  139 tgcgtgagttaactcacgcaagtgttaattacagcgtgagttaa 182  Q
    |||||||||||||||||||||||||||||| |||||||||||||    
T  20419594 tgcgtgagttaactcacgcaagtgttaattccagcgtgagttaa 20419551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 206
Target Start/End: Original strand, 3040062 - 3040127
Alignment:
Q  141 cgtgagttaactcacgcaagtgttaattacagcgtgagttaagttgcgcggcgttagttaactaat 206  Q
    ||||||||||||||| ||||  |||||| ||||||||||| |||||||| |||||| |||||||||    
T  3040062 cgtgagttaactcacacaagatttaatttcagcgtgagttgagttgcgcagcgttacttaactaat 3040127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 187
Target Start/End: Complemental strand, 20419568 - 20419513
Alignment:
Q  133 aattcctgcgtgagttaactcacgcaagtgttaa-ttacagcgtgagttaagttgc 187  Q
    |||||| ||||||||||||||||||||||||||| || || |||||||||||||||    
T  20419568 aattccagcgtgagttaactcacgcaagtgttaatttccaacgtgagttaagttgc 20419513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 17854694 - 17854734
Alignment:
Q  142 gtgagttaactcacgcaagtgttaattacagcgtgagttaa 182  Q
    |||||||||||||| |||||||||||| |||||||||||||    
T  17854694 gtgagttaactcacacaagtgttaatttcagcgtgagttaa 17854734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 135 - 186
Target Start/End: Complemental strand, 2190384 - 2190333
Alignment:
Q  135 ttcctgcgtgagttaactcacgcaagtgttaattacagcgtgagttaagttg 186  Q
    |||| ||||||||||||| || |||| ||||||| |||||||||||||||||    
T  2190384 ttccagcgtgagttaacttacacaagcgttaattccagcgtgagttaagttg 2190333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 139 - 182
Target Start/End: Original strand, 14410733 - 14410776
Alignment:
Q  139 tgcgtgagttaactcacgcaagtgttaattacagcgtgagttaa 182  Q
    |||||||||||||||||||| ||||||||| |||| ||||||||    
T  14410733 tgcgtgagttaactcacgcacgtgttaatttcagcatgagttaa 14410776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 137 - 184
Target Start/End: Complemental strand, 18936760 - 18936713
Alignment:
Q  137 cctgcgtgagttaactcacgcaagtgttaattacagcgtgagttaagt 184  Q
    |||||||||||||||||||||||||||||  | |||||||| ||||||    
T  18936760 cctgcgtgagttaactcacgcaagtgttacatgcagcgtgacttaagt 18936713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 182
Target Start/End: Complemental strand, 25994632 - 25994590
Alignment:
Q  140 gcgtgagttaactcacgcaagtgttaattacagcgtgagttaa 182  Q
    ||||||||||||||||||| ||||||||| | |||||||||||    
T  25994632 gcgtgagttaactcacgcaggtgttaatttctgcgtgagttaa 25994590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 182
Target Start/End: Original strand, 25994911 - 25994953
Alignment:
Q  140 gcgtgagttaactcacgcaagtgttaattacagcgtgagttaa 182  Q
    |||||||||||||||||||||||||||||   |||||||||||    
T  25994911 gcgtgagttaactcacgcaagtgttaattctcgcgtgagttaa 25994953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 181
Target Start/End: Complemental strand, 126890 - 126849
Alignment:
Q  140 gcgtgagttaactcacgcaagtgttaattacagcgtgagtta 181  Q
    |||||| |||||||||||| ||||||||| ||||||||||||    
T  126890 gcgtgacttaactcacgcaggtgttaattccagcgtgagtta 126849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 34328661 - 34328605
Alignment:
Q  133 aattcctgcgtgagttaactcacgcaagtgttaattacagcgtgagttaagttgcgc 189  Q
    |||||| ||||||||||||||||||||||||||||| || |||||||||| ||||||    
T  34328661 aattccagcgtgagttaactcacgcaagtgttaattccaacgtgagttaaattgcgc 34328605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 127 - 189
Target Start/End: Complemental strand, 9384701 - 9384639
Alignment:
Q  127 attgtaaattcctgcgtgagttaactcacgcaagtgttaattacagcgtgagttaagttgcgc 189  Q
    ||||| |||||| ||||||||||||| | ||||||||||||| ||| ||||||||||||||||    
T  9384701 attgttaattccagcgtgagttaactaaggcaagtgttaatttcagtgtgagttaagttgcgc 9384639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 182
Target Start/End: Original strand, 23284773 - 23284815
Alignment:
Q  140 gcgtgagttaactcacgcaagtgttaattacagcgtgagttaa 182  Q
    ||||||||||||||||||| ||||||||| |||||||||||||    
T  23284773 gcgtgagttaactcacgcaggtgttaattccagcgtgagttaa 23284815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 189
Target Start/End: Original strand, 11561423 - 11561470
Alignment:
Q  142 gtgagttaactcacgcaagtgttaattacagcgtgagttaagttgcgc 189  Q
    ||||||||||||| | ||||||||||| || |||||||||||||||||    
T  11561423 gtgagttaactcaggaaagtgttaatttcaacgtgagttaagttgcgc 11561470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 185
Target Start/End: Complemental strand, 43466787 - 43466745
Alignment:
Q  143 tgagttaactcacgcaagtgttaattacagcgtgagttaagtt 185  Q
    ||||||||||||| ||||| |||||| ||||||||||||||||    
T  43466787 tgagttaactcacacaagtattaatttcagcgtgagttaagtt 43466745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 182
Target Start/End: Complemental strand, 34328681 - 34328644
Alignment:
Q  145 agttaactcacgcaagtgttaattacagcgtgagttaa 182  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  34328681 agttaactcacacaagtgttaattccagcgtgagttaa 34328644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 9384722 - 9384678
Alignment:
Q  138 ctgcgtgagttaactcacgcaagtgttaattacagcgtgagttaa 182  Q
    |||||| |||||||||||| || |||||||| |||||||||||||    
T  9384722 ctgcgtaagttaactcacgtaattgttaattccagcgtgagttaa 9384678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 166
Target Start/End: Original strand, 47441665 - 47441693
Alignment:
Q  138 ctgcgtgagttaactcacgcaagtgttaa 166  Q
    |||||||||||||||||||||||||||||    
T  47441665 ctgcgtgagttaactcacgcaagtgttaa 47441693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 184
Target Start/End: Complemental strand, 9875820 - 9875774
Alignment:
Q  138 ctgcgtgagttaactcacgcaagtgttaattacagcgtgagttaagt 184  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||||    
T  9875820 ctgcgtgagttaactcaggcaagtgttaattccagcgtgagttaagt 9875774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 270
Target Start/End: Original strand, 5741523 - 5741602
Alignment:
Q  191 gcgttagttaactaatataggggtattttgggcaacgctgcaggatgcgagcgaaaagtaccgggtgaagagcagaattc 270  Q
    |||||||||||||||   ||| ||||||||| ||  ||||||||  ||||||||||||| | ||||||||||||||||||    
T  5741523 gcgttagttaactaacgcaggtgtattttggtcatggctgcagggcgcgagcgaaaagtgcagggtgaagagcagaattc 5741602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 9863453 - 9863498
Alignment:
Q  137 cctgcgtgagttaactcacgcaagtgttaattacagcgtgagttaa 182  Q
    ||||||||||||||||||| |||||||||||| |||||| ||||||    
T  9863453 cctgcgtgagttaactcacacaagtgttaattccagcgtcagttaa 9863498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 182
Target Start/End: Original strand, 9863519 - 9863568
Alignment:
Q  133 aattcctgcgtgagttaactcacgcaagtgttaattacagcgtgagttaa 182  Q
    |||||| |||||| |||||||||||||||||||||| ||| |||||||||    
T  9863519 aattccagcgtgatttaactcacgcaagtgttaattccagtgtgagttaa 9863568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 270
Target Start/End: Original strand, 4362453 - 4362512
Alignment:
Q  211 gggtattttgggcaacgctgcaggatgcgagcgaaaagtaccgggtgaagagcagaattc 270  Q
    ||||| ||| ||||||||||||||  ||||||||||||| | || |||||||||||||||    
T  4362453 gggtaatttaggcaacgctgcagggcgcgagcgaaaagtgctggatgaagagcagaattc 4362512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 143 - 182
Target Start/End: Complemental strand, 32879775 - 32879736
Alignment:
Q  143 tgagttaactcacgcaagtgttaattacagcgtgagttaa 182  Q
    |||||||||||||||| ||||||||| |||||||||||||    
T  32879775 tgagttaactcacgcatgtgttaatttcagcgtgagttaa 32879736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 270
Target Start/End: Complemental strand, 5741236 - 5741178
Alignment:
Q  212 ggtattttgggcaacgctgcaggatgcgagcgaaaagtaccgggtgaagagcagaattc 270  Q
    |||||||||| ||  ||||||||| |||||| |||||| | ||||||||||||||||||    
T  5741236 ggtattttggtcatggctgcaggacgcgagcaaaaagtgcagggtgaagagcagaattc 5741178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 9863551 - 9863607
Alignment:
Q  133 aattcctgcgtgagttaactcacgcaagtgttaattacagcgtgagttaagttgcgc 189  Q
    |||||| | ||||||||||| | ||||||||||||| ||| ||||| ||||||||||    
T  9863551 aattccagtgtgagttaacttaggcaagtgttaattccagtgtgaggtaagttgcgc 9863607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 26622233 - 26622273
Alignment:
Q  142 gtgagttaactcacgcaagtgttaattacagcgtgagttaa 182  Q
    ||||||||||||||||| ||||||||| ||||| |||||||    
T  26622233 gtgagttaactcacgcaggtgttaatttcagcgcgagttaa 26622273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 26728211 - 26728251
Alignment:
Q  142 gtgagttaactcacgcaagtgttaattacagcgtgagttaa 182  Q
    ||||||||||||||||| ||||||||| ||||| |||||||    
T  26728211 gtgagttaactcacgcaggtgttaatttcagcgcgagttaa 26728251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 189
Target Start/End: Complemental strand, 31271897 - 31271851
Alignment:
Q  143 tgagttaactcacgcaagtgttaattacagcgtgagttaagttgcgc 189  Q
    |||||||||||| |||||| |||||| ||||||||||||||||||||    
T  31271897 tgagttaactcatgcaagtcttaattccagcgtgagttaagttgcgc 31271851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 182
Target Start/End: Original strand, 13461231 - 13461269
Alignment:
Q  144 gagttaactcacgcaagtgttaattacagcgtgagttaa 182  Q
    ||||||||||||||| ||||||||| |||||||||||||    
T  13461231 gagttaactcacgcacgtgttaatttcagcgtgagttaa 13461269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 270
Target Start/End: Original strand, 21135 - 21178
Alignment:
Q  227 gctgcaggatgcgagcgaaaagtaccgggtgaagagcagaattc 270  Q
    |||||||||||||||||||| || | ||||||||||||||||||    
T  21135 gctgcaggatgcgagcgaaatgtgctgggtgaagagcagaattc 21178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 181
Target Start/End: Original strand, 36154 - 36192
Alignment:
Q  143 tgagttaactcacgcaagtgttaattacagcgtgagtta 181  Q
    |||||||||||||||| ||||||||| ||||||||||||    
T  36154 tgagttaactcacgcacgtgttaattccagcgtgagtta 36192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University