View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16020_low_85 (Length: 288)
Name: NF16020_low_85
Description: NF16020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16020_low_85 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: scaffold0003 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 32 - 288
Target Start/End: Complemental strand, 230997 - 230741
Alignment:
| Q |
32 |
ttcgtgtagttcatttactaaatcaccaannnnnnncttcaagttatgatattctcgcttgaaatcactttgcttttcctgcaacagacacagctctctc |
131 |
Q |
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| T |
230997 |
ttcgtgtagttcatttactacatcaccaatttttttcttcaagttatgatattctcgcttgaaatcactttgcttttcctgcaacagacacagctctctc |
230898 |
T |
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| Q |
132 |
ttcgtgttttccaggtcatccttattctttgcaaaattatcaagcctttctcgcatctgtttttcctttgaatccagctccgactcccggttttttaatt |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
230897 |
ttcgtgttttccaggtcatccttattctttgcaaaattatcaagcctttctcgcatctgtttttcctttgaatccagctccgactcccggttttttaatt |
230798 |
T |
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| Q |
232 |
gttgaagagtttcttccaaattagtttgagcttcactatcagcacgttgctgcccat |
288 |
Q |
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| T |
230797 |
gttgaagagtttcttccaaattagtttgagcttcactatcaccacgttgctgcccat |
230741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 171 - 285
Target Start/End: Complemental strand, 30584871 - 30584757
Alignment:
| Q |
171 |
tcaagcctttctcgcatctgtttttcctttgaatccagctccgactcccggttttttaattgttgaagagtttcttccaaattagtttgagcttcactat |
270 |
Q |
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|||||||||||||||||||| ||||||| |||||||||||| | ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
30584871 |
tcaagcctttctcgcatctgcttttcctgtgaatccagctcagcctcccggttttttaattgttgaagattttcttccaaattattttgagcttcactat |
30584772 |
T |
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| Q |
271 |
cagcacgttgctgcc |
285 |
Q |
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| T |
30584771 |
cagcatgttgctgcc |
30584757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 171 - 285
Target Start/End: Complemental strand, 25834042 - 25833928
Alignment:
| Q |
171 |
tcaagcctttctcgcatctgtttttcctttgaatccagctccgactcccggttttttaattgttgaagagtttcttccaaattagtttgagcttcactat |
270 |
Q |
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|||||||||||||||||||| ||||||| |||||||||||| | |||| |||||||||||||||||||| ||||||||||||| ||| | ||||||||| |
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| T |
25834042 |
tcaagcctttctcgcatctgcttttcctgtgaatccagctcagtctcctggttttttaattgttgaagattttcttccaaattgttttcaacttcactat |
25833943 |
T |
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| Q |
271 |
cagcacgttgctgcc |
285 |
Q |
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||||| ||||||||| |
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| T |
25833942 |
cagcatgttgctgcc |
25833928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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