View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16020_low_86 (Length: 285)
Name: NF16020_low_86
Description: NF16020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16020_low_86 |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 10 - 265
Target Start/End: Complemental strand, 9421388 - 9421133
Alignment:
| Q |
10 |
agataattctatatgccacaggttagagatacattctttttctgatggttaattcaatttgctgttaagaatttgtccattatttaactatttttcttca |
109 |
Q |
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| T |
9421388 |
agataattctatatgccacaggttagagatacattctttttctgatggttaattcaatttgctgttaagaatttgtccattatttaactatttttcttca |
9421289 |
T |
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| Q |
110 |
agtatttgtcatatgttttaattcagtgtgcttaaagtcgatgtataattatattcgcccctacacgataattactcatagattaattagtgttgtttta |
209 |
Q |
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| T |
9421288 |
agtttttgtcatatgttttaattcagtgtgcttaaagtcgatgtataattatattcgcccctacacgataattactcatagattaattagtgttgtttta |
9421189 |
T |
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| Q |
210 |
tgcagttgtgttcgtaggttccgttatgataacactgattattgcagcctgtttgc |
265 |
Q |
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| T |
9421188 |
tgcagttgtgttcgtaggttccgttatgataacactgattattgcagcctgtttgc |
9421133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 177 - 265
Target Start/End: Complemental strand, 9438304 - 9438216
Alignment:
| Q |
177 |
ataattactcatagattaattagtgttgttttatgcagttgtgttcgtaggttccgttatgataacactgattattgcagcctgtttgc |
265 |
Q |
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| T |
9438304 |
ataattactcataaattaattagtgttgttttgtgcagttgtgttcgtaggttcagttatggtaacactgattattgcagcctgtttgc |
9438216 |
T |
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