View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16020_low_88 (Length: 280)
Name: NF16020_low_88
Description: NF16020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16020_low_88 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 29 - 266
Target Start/End: Complemental strand, 11614914 - 11614677
Alignment:
| Q |
29 |
tttttcacccttacacgttcccacttctattttttcggtacatccatttttgttattgttattagccgtatattttgtccggtggagaagtatgattttt |
128 |
Q |
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| T |
11614914 |
tttttcacccttacacgtttccacttctattttttcggtacatccatttttgttattgttattagccgtatattttgtccggtggagaagtatgattttt |
11614815 |
T |
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| Q |
129 |
acattgctaagctaatgacttgaaagagatgaaactctgaactggtgtatagtgtatcaaaaagtaaatgttaatcaagcatcttatttttgaatgaaat |
228 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
11614814 |
acactgctaagctaatgacttgaaagagatgaaactctgaactggtgtatagtgtatcaaaaagtaaatgttaatctatcatcttatttttgaatgaaat |
11614715 |
T |
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| Q |
229 |
gttgacaccaagaatttttgtgaattgtgatatctgtg |
266 |
Q |
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| T |
11614714 |
gttgacaccaagaatttttgtgaattgtgatatctgtg |
11614677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 266
Target Start/End: Complemental strand, 13765398 - 13765284
Alignment:
| Q |
156 |
gatgaaactctgaactggtgtatagtgtatcaaaaagtaaatgttaatcaagcatc----ttatttttgaatgaaatgttgacaccaagaatttttgtga |
251 |
Q |
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| T |
13765398 |
gatgaaactctcatctggtatatagtgtatcaaaaaataaatgttaatctagcaccctctttatgtatgaatgaaatgttggctctgagaatttttgtgc |
13765299 |
T |
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| Q |
252 |
attgtgatatctgtg |
266 |
Q |
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|| ||||||| |||| |
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| T |
13765298 |
atggtgatatgtgtg |
13765284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 259
Target Start/End: Complemental strand, 13751995 - 13751888
Alignment:
| Q |
156 |
gatgaaactctgaactggtgtatagtgtatcaaaaagtaaatgttaatcaagcatc----ttatttttgaatgaaatgttgacaccaagaatttttgtga |
251 |
Q |
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| T |
13751995 |
gatgaaactctcatctggtatatagtgtatcaaaaaataaatgttaatctagcaccctctttatgtatgaatgaaatgttggctctgagaatttttgtgc |
13751896 |
T |
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| Q |
252 |
attgtgat |
259 |
Q |
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|| ||||| |
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| T |
13751895 |
atggtgat |
13751888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 209
Target Start/End: Complemental strand, 13738566 - 13738513
Alignment:
| Q |
156 |
gatgaaactctgaactggtgtatagtgtatcaaaaagtaaatgttaatcaagca |
209 |
Q |
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||||||||||| | ||||| |||||||||||||||||||||||| |||| |||| |
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| T |
13738566 |
gatgaaactctcatctggtatatagtgtatcaaaaagtaaatgtcaatctagca |
13738513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 11614999 - 11614969
Alignment:
| Q |
1 |
tatgattttagtttgatgcaccaatgtattt |
31 |
Q |
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| T |
11614999 |
tatgattttagtttgatgcaccaatgtattt |
11614969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 171 - 266
Target Start/End: Original strand, 35080260 - 35080355
Alignment:
| Q |
171 |
tggtgtatagtgtatcaaaaagtaaatgttaatcaagcatcttatttttgaatgaaatgttgacaccaagaatttttgtgaattgtgatatctgtg |
266 |
Q |
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| T |
35080260 |
tggtgtatagcgtatcaaacagtaaatgttaatctagcaccctctttttgaatgaaatgttggtactgaggatttttgtggatggtgatatctgtg |
35080355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 203
Target Start/End: Original strand, 15607184 - 15607238
Alignment:
| Q |
149 |
tgaaagagatgaaactctgaactggtgtatagtgtatcaaaaagtaaatgttaat |
203 |
Q |
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|||||||||||||||||| | || | |||||||||||||||||||||||||||| |
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| T |
15607184 |
tgaaagagatgaaactcttatctactatatagtgtatcaaaaagtaaatgttaat |
15607238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 203
Target Start/End: Original strand, 15626105 - 15626159
Alignment:
| Q |
149 |
tgaaagagatgaaactctgaactggtgtatagtgtatcaaaaagtaaatgttaat |
203 |
Q |
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|||||||||||||||||| | || | |||||||||||||||| ||||||||||| |
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| T |
15626105 |
tgaaagagatgaaactcttatctactatatagtgtatcaaaaattaaatgttaat |
15626159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 203
Target Start/End: Original strand, 15638704 - 15638758
Alignment:
| Q |
149 |
tgaaagagatgaaactctgaactggtgtatagtgtatcaaaaagtaaatgttaat |
203 |
Q |
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|
|||||||||||||||||| | || | ||||| |||||||||||||||||||||| |
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| T |
15638704 |
tgaaagagatgaaactcttatctactatatagagtatcaaaaagtaaatgttaat |
15638758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 203
Target Start/End: Original strand, 15649865 - 15649919
Alignment:
| Q |
149 |
tgaaagagatgaaactctgaactggtgtatagtgtatcaaaaagtaaatgttaat |
203 |
Q |
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|||||||||||||||||| | || | |||||||||||||| ||||||||||||| |
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| T |
15649865 |
tgaaagagatgaaactcttatctactatatagtgtatcaaacagtaaatgttaat |
15649919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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