View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16020_low_89 (Length: 279)
Name: NF16020_low_89
Description: NF16020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16020_low_89 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 14 - 261
Target Start/End: Original strand, 28314743 - 28314990
Alignment:
| Q |
14 |
atataaatttgtgttggtttaatttgttgatcaacacatgcacaaggttttaaattttaaataaactggttgaccgtaatcgtagctatcatgaaggttt |
113 |
Q |
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| T |
28314743 |
atataaatttgtgttggtttaatttgttgatcaacacatgcacaaggttttaaattttaaataaactggctgaccgtaatcgtagctatcatgaaggttt |
28314842 |
T |
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| Q |
114 |
ttgtctttgattcctatcaatatattcatttcttatgtctttgcaattgcattcatattaattctgactgcaattttatgtgatattataagaatcttga |
213 |
Q |
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| T |
28314843 |
ttgtctttgattcctatctatatattcatttcttatgtctttgcaattgcattcatattaattttgactgcaattttatgtgatattataagaatcttga |
28314942 |
T |
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| Q |
214 |
cgcaattttaattgcgatttaaaaacttgtaaatatgcatgtctgagg |
261 |
Q |
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| T |
28314943 |
cgcaattttaattgcgatttaaaaacttgtaaatatgcatgtctgagg |
28314990 |
T |
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