View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16020_low_95 (Length: 268)
Name: NF16020_low_95
Description: NF16020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16020_low_95 |
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Alignment Details
Target: chr7 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 23 - 260
Target Start/End: Original strand, 26122289 - 26122516
Alignment:
| Q |
23 |
agcacacttgtatcaaaagctcgatcgtcacacactttttggtcatgatgcaattgcaatcttactaacaatttgtaaaagggaaataacacgtgatcct |
122 |
Q |
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| T |
26122289 |
agcacacttgtatcaaaagctcgatcgtcacacactttttggtcatgatgcaattgcaatcttaccaacaatctgtaaaagggaaataacacgtga---- |
26122384 |
T |
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| Q |
123 |
tggtgatcgttgtgtaatagtcacattttgaggtttataatccccagttttatcctaaactcaatagcttcatcttcatctatgtttgattcatcattga |
222 |
Q |
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| T |
26122385 |
------tcgttgtgtaatagtcacattttaaggtttataatccccaaatttatcctaaactcaatagctttatcttcatctatgtttgattcatcattga |
26122478 |
T |
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| Q |
223 |
aaagaagacaaaagtcattgccgtcctgggtctctgct |
260 |
Q |
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| T |
26122479 |
aaagaagacaaaagtcattgcggtgctgagtctctgct |
26122516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 21 - 242
Target Start/End: Original strand, 26131586 - 26131793
Alignment:
| Q |
21 |
atagcacacttgtatcaaaagctcgatcgtcacacactttttggtcatgatgcaattgcaatcttactaacaatttgtaaaagggaaataacacgtgatc |
120 |
Q |
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| T |
26131586 |
atagcacacctgtatcaaaagctcgaccgtcacacactttttggtcataatgcaatttcaatcttactaacaaattgtaaacgggaagtaatacgtt--- |
26131682 |
T |
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| Q |
121 |
cttggtgatcgttgtgtaatagtcacattttgaggtttataatccccagttttatcctaaactcaatagcttcatcttcatctatgtttgattcatcatt |
220 |
Q |
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| T |
26131683 |
-----------ttgtgcaacaaccacatcttaaggtttataatcccaaattttatctcaaattcaatagcttcatcttcatctatgtttgattcatcatt |
26131771 |
T |
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| Q |
221 |
gaaaagaagacaaaagtcattg |
242 |
Q |
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| T |
26131772 |
gaaaagaagacaaaagtcattg |
26131793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 234
Target Start/End: Original strand, 27502653 - 27502682
Alignment:
| Q |
205 |
tgtttgattcatcattgaaaagaagacaaa |
234 |
Q |
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| T |
27502653 |
tgtttgattcatcattgaaaagaagacaaa |
27502682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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